RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 UTP11Q9Y3A2 253 aaKnown RBP22.16■■□□□ 1.14
CLN3-209ENST00000561689 SOD2P04179 222 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 OR1D2P34982 312 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 PPP6R3Q5H9R7 873 aaPredicted RBP22.16■■□□□ 1.14
CLN3-209ENST00000561689 NUP93Q8N1F7 819 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 SPPL2BQ8TCT7 592 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 PIK3R5Q8WYR1 880 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 DHX35Q9H5Z1 703 aaKnown RBP22.16■■□□□ 1.14
CLN3-209ENST00000561689 PCDH18Q9HCL0 1135 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 TMPRSS4Q9NRS4 437 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 HOMER3Q9NSC5 361 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 AP4E1Q9UPM8 1137 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 EFR3BQ9Y2G0 817 aa22.16■■□□□ 1.14
CLN3-209ENST00000561689 WDR27A2RRH5 827 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 FAM187AA6NFU0 413 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 GJB5O95377 273 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 IL4RP24394 825 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 YWHAGP61981 247 aaKnown RBP eCLIP22.15■■□□□ 1.14
CLN3-209ENST00000561689 USP46P62068 366 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 ROR1Q01973 937 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 PDK2Q15119 407 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 SLC8B1Q6J4K2 584 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 MAP7D3Q8IWC1 876 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 GDAP1L1Q96MZ0 367 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 MAK16Q9BXY0 300 aaKnown RBP22.15■■□□□ 1.14
CLN3-209ENST00000561689 DPH5Q9H2P9 285 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 DDIT4Q9NX09 232 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 NFU1Q9UMS0 254 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 BACE2Q9Y5Z0 518 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 PTPRDP23468 1912 aa22.15■■□□□ 1.14
CLN3-209ENST00000561689 DAPK3O43293 454 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 TMEM240Q5SV17 173 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 BBS12Q6ZW61 710 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 SCD5Q86SK9 330 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 CCDC114Q96M63 670 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 RUNDC3BQ96NL0 473 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 CLSTN3Q9BQT9 956 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 ERP44Q9BS26 406 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 ZBED2Q9BTP6 218 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 FAM204AQ9H8W3 233 aa22.14■■□□□ 1.14
CLN3-209ENST00000561689 ECEL1O95672 775 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 TNFRSF8P28908 595 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 L1CAMP32004 1257 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 SMARCB1Q12824 385 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 PYROXD2Q8N2H3 581 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 RAB17Q9H0T7 212 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 DNPEPQ9ULA0 475 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 FZD10Q9ULW2 581 aa22.14■■□□□ 1.13
CLN3-209ENST00000561689 BHMG1C9JSJ3 638 aaPredicted RBP22.13■■□□□ 1.13
CLN3-209ENST00000561689 LIASO43766 372 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 HAPLN1P10915 354 aaPredicted RBP22.13■■□□□ 1.13
CLN3-209ENST00000561689 GLUD2P49448 558 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 DPYSL2Q16555 572 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 ATL2Q8NHH9 583 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 NMUR1Q9HB89 426 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 MTMR10Q9NXD2 777 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 RASAL2Q9UJF2 1139 aa22.13■■□□□ 1.13
CLN3-209ENST00000561689 A0A1W2PQH9 124 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 CBX1P83916 185 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 DSG1Q02413 1049 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 PPP1R7Q15435 360 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 MAP9Q49MG5 647 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 BTBD8Q5XKL5 378 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 TAC4Q86UU9 113 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 C2orf15Q8WU43 125 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 AUTS2Q8WXX7 1259 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 RNF157Q96PX1 679 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 KCTD15Q96SI1 283 aaPredicted RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 WDR6Q9NNW5 1121 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 RRN3Q9NYV6 651 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.12■■□□□ 1.13
CLN3-209ENST00000561689 SCML2Q9UQR0 700 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 DNAJB2P25686 324 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 OTUD4Q01804 1114 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 MTMR3Q13615 1198 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 BYSLQ13895 437 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 HLTFQ14527 1009 aaKnown RBP eCLIP22.12■■□□□ 1.13
CLN3-209ENST00000561689 ANKRD20A8PQ5CZ79 823 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 DUPD1Q68J44 220 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 DENND5BQ6ZUT9 1274 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 DDX53Q86TM3 631 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 VPS52Q8N1B4 723 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 ACTL9Q8TC94 416 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 DQX1Q8TE96 717 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 AENQ8WTP8 325 aaKnown RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 SEC14L1Q92503 715 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 PGAP3Q96FM1 320 aaPredicted RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 HERC2P3Q9BVR0 1158 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 FBXO44Q9H4M3 255 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 ABCC13Q9NSE7 274 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 OSER1Q9NX31 292 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 NUDT5Q9UKK9 219 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 ZMYND8Q9ULU4 1186 aaPredicted RBP22.12■■□□□ 1.13
CLN3-209ENST00000561689 SNX24Q9Y343 169 aa22.12■■□□□ 1.13
CLN3-209ENST00000561689 HTRA4P83105 476 aaPredicted RBP22.11■■□□□ 1.13
CLN3-209ENST00000561689 KRT17Q04695 432 aa22.11■■□□□ 1.13
CLN3-209ENST00000561689 PSRC1Q6PGN9 363 aaPredicted RBP22.11■■□□□ 1.13
CLN3-209ENST00000561689 FIBCD1Q8N539 461 aa22.11■■□□□ 1.13
CLN3-209ENST00000561689 PCDH19Q8TAB3 1148 aa22.11■■□□□ 1.13
CLN3-209ENST00000561689 FAM71BQ8TC56 605 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms