RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NAGPAQ9UK23 515 aa17.07■□□□□ 0.32
SNX1-213ENST00000561026 HCN2Q9UL51 889 aa17.07■□□□□ 0.32
SNX1-213ENST00000561026 STARD13Q9Y3M8 1113 aa17.07■□□□□ 0.32
SNX1-213ENST00000561026 MYO18AQ92614 2054 aaKnown RBP17.06■□□□□ 0.32
SNX1-213ENST00000561026 TCRBV21S2A2A0A5A6 115 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 TYRP14679 529 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 RAD23BP54727 409 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 COBLL1Q53SF7 1204 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 ZNF658Q5TYW1 1059 aaPredicted RBP17.06■□□□□ 0.32
SNX1-213ENST00000561026 RNF43Q68DV7 783 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 GRAMD4Q6IC98 578 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 Q6ZNB5 142 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 TPGS1Q6ZTW0 290 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 SLC4A11Q8NBS3 891 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 HMGB4Q8WW32 186 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 TATDN2Q93075 761 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 XPO6Q96QU8 1125 aaKnown RBP17.06■□□□□ 0.32
SNX1-213ENST00000561026 ARID3AQ99856 593 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 EPG5Q9HCE0 2579 aa17.06■□□□□ 0.32
SNX1-213ENST00000561026 GOLGA6L4A6NEF3 574 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 STC2O76061 302 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 RALAP11233 206 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 FKBP3Q00688 224 aaKnown RBP17.05■□□□□ 0.32
SNX1-213ENST00000561026 BYSLQ13895 437 aaKnown RBP17.05■□□□□ 0.32
SNX1-213ENST00000561026 CBWD6Q4V339 395 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 CBWD3Q5JTY5 395 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 CBWD5Q5RIA9 395 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 ARHGAP17Q68EM7 881 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 ANKRD40Q6AI12 368 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 MIB1Q86YT6 1006 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 ZC3H3Q8IXZ2 948 aaKnown RBP17.05■□□□□ 0.32
SNX1-213ENST00000561026 FRMD1Q8N878 549 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 ENGASEQ8NFI3 743 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 SPATA20Q8TB22 786 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 SPACA7Q96KW9 195 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 CNTNAP3BQ96NU0 1288 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 CDK5RAP1Q96SZ6 601 aaKnown RBP17.05■□□□□ 0.32
SNX1-213ENST00000561026 TSG101Q99816 390 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 LSM14BQ9BX40 385 aaKnown RBP17.05■□□□□ 0.32
SNX1-213ENST00000561026 CNTNAP3Q9BZ76 1288 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 CIZ1Q9ULV3 898 aaPredicted RBP17.05■□□□□ 0.32
SNX1-213ENST00000561026 COQ4Q9Y3A0 265 aa17.05■□□□□ 0.32
SNX1-213ENST00000561026 LNP1A1A4G5 178 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 KHNYNO15037 678 aaKnown RBP17.04■□□□□ 0.32
SNX1-213ENST00000561026 SLC16A3O15427 465 aaKnown RBP17.04■□□□□ 0.32
SNX1-213ENST00000561026 MAP3K13O43283 966 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 SMC2O95347 1197 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 NTSR1P30989 418 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 DHPSP49366 369 aaPredicted RBP17.04■□□□□ 0.32
SNX1-213ENST00000561026 PMS1P54277 932 aaKnown RBP17.04■□□□□ 0.32
SNX1-213ENST00000561026 MAP7D1Q3KQU3 841 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 DCAF17Q5H9S7 520 aaPredicted RBP17.04■□□□□ 0.32
SNX1-213ENST00000561026 TCERG1LQ5VWI1 586 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 LPCAT2Q7L5N7 544 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 CYP2U1Q7Z449 544 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 PIGZQ86VD9 579 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 PGBD3Q8N328 593 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 ANKRD52Q8NB46 1076 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 EDEM2Q9BV94 578 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 MBD1Q9UIS9 605 aaPredicted RBP17.04■□□□□ 0.32
SNX1-213ENST00000561026 THADAQ6YHU6 1953 aa17.04■□□□□ 0.32
SNX1-213ENST00000561026 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 A0A1W2PQF6 199 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 PRRT4C9JH25 899 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 KLKB1P03952 638 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 CISD3P0C7P0 127 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 HOXB2P14652 356 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 KCNA4P22459 653 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 COG7P83436 770 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 RAB41Q5JT25 222 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 SPDYCQ5MJ68 293 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 EGFLAMQ63HQ2 1017 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 TOGARAM2Q6ZUX3 1019 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 TMEFF1Q8IYR6 380 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 ARHGAP18Q8N392 663 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 ERCC4Q92889 916 aaPredicted RBP17.03■□□□□ 0.32
SNX1-213ENST00000561026 ZNF510Q9Y2H8 683 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 CHD8Q9HCK8 2581 aa17.03■□□□□ 0.32
SNX1-213ENST00000561026 C4orf47A7E2U8 309 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 PATE3B3GLJ2 98 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 GABRG2P18507 467 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 WASP42768 502 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 DGKGP49619 791 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 SLC8A3P57103 927 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 IRX4P78413 519 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 NUCB2P80303 420 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 LRRC63Q05C16 580 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 CUL2Q13617 745 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 GON4LQ3T8J9 2241 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 PM20D1Q6GTS8 502 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 SDE2Q6IQ49 451 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 CHPFQ8IZ52 775 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 PIGKQ92643 395 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 BHMTQ93088 406 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 SMARCE1Q969G3 411 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 SLC35C1Q96A29 364 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 P2RY11Q96G91 374 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 TIGD1Q96MW7 591 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 ACOX2Q99424 681 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 GTPBP4Q9BZE4 634 aaKnown RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms