RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 FERMT1Q9BQL6 677 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 OSBPL7Q9BZF2 842 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 NXF3Q9H4D5 531 aaKnown RBP10.09□□□□□ -0.79
RTF1-206ENST00000560447 NRDE2Q9H7Z3 1164 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 USP29Q9HBJ7 922 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 NGRNQ9NPE2 291 aaKnown RBP10.09□□□□□ -0.79
RTF1-206ENST00000560447 DNAJC17Q9NVM6 304 aaKnown RBP10.09□□□□□ -0.79
RTF1-206ENST00000560447 HAUS2Q9NVX0 235 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.09□□□□□ -0.79
RTF1-206ENST00000560447 XPO7Q9UIA9 1087 aaKnown RBP10.09□□□□□ -0.79
RTF1-206ENST00000560447 ZNF180Q9UJW8 692 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 ARL2BPQ9Y2Y0 163 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 STARD13Q9Y3M8 1113 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.09□□□□□ -0.79
RTF1-206ENST00000560447 DOCK3Q8IZD9 2030 aa10.09□□□□□ -0.79
RTF1-206ENST00000560447 COL4A4P53420 1690 aaPredicted RBP10.09□□□□□ -0.79
RTF1-206ENST00000560447 CASP8AP2Q9UKL3 1982 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 TCP11X1B4DZS4 312 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 C3orf80F5H4A9 247 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 H0YHG0 523 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 GABRDO14764 452 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 PPEF2O14830 753 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 PPP1R12AO14974 1030 aaPredicted RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 TMEM63AO94886 807 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 ITGBL1O95965 494 aaPredicted RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 MLNP12872 115 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 KRT15P19012 456 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 L1CAMP32004 1257 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 NOS2P35228 1153 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 FDFT1P37268 417 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 ARL4AP40617 200 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 SKIV2L2P42285 1042 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 MSH2P43246 934 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 LHX1P48742 406 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 RGS7P49802 495 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 HDAC4P56524 1084 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 BASP1P80723 227 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 SARNPP82979 210 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 TAF1CQ15572 869 aaPredicted RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 PDK4Q16654 411 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 SLC25A52Q3SY17 297 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 SLC45A4Q5BKX6 768 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 LGSNQ5TDP6 509 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 TRPM8Q7Z2W7 1104 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 BNIPLQ7Z465 357 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 SPATA21Q7Z572 469 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 CCNJLQ8IV13 435 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 FBXO36Q8NEA4 188 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 PCDH19Q8TAB3 1148 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 ZNF398Q8TD17 642 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 NT5C3BQ969T7 300 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 PWWP2AQ96N64 755 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 QKIQ96PU8 341 aaKnown RBP eCLIP10.08□□□□□ -0.8
RTF1-206ENST00000560447 PPP1R10Q96QC0 940 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 TGS1Q96RS0 853 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 MTG1Q9BT17 334 aaPredicted RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 DUSP16Q9BY84 665 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 XAB2Q9HCS7 855 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 EIF2B3Q9NR50 452 aaKnown RBP10.08□□□□□ -0.8
RTF1-206ENST00000560447 CTNNAL1Q9UBT7 734 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 STAP1Q9ULZ2 295 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 IPPQ9Y573 584 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 TRPV2Q9Y5S1 764 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 PTCH2Q9Y6C5 1203 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 TEX264Q9Y6I9 313 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 CAPN7Q9Y6W3 813 aa10.08□□□□□ -0.8
RTF1-206ENST00000560447 ARHGEF37A1IGU5 675 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 C9IYK1 514 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 POC1B-GALNT4F8VUJ3 575 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 TREHO43280 583 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 TYROBPO43914 113 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 STK10O94804 968 aaKnown RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 IL1BP01584 269 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 MYL3P08590 195 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 ALADP13716 330 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 NPR3P17342 541 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 TAC1P20366 129 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 CYP2F1P24903 491 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 RPL9P32969 192 aaKnown RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 MAGEA3P43357 314 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 IFNAR2P48551 515 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 RAB27AP51159 221 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 GJA9P57773 515 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 LILRA4P59901 499 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 MRPS6P82932 125 aaKnown RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 ATP11AP98196 1134 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 PURAQ00577 322 aaKnown RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 NAB1Q13506 487 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 MPP2Q14168 576 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 FASTKD3Q14CZ7 662 aaKnown RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 TAF5Q15542 800 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 FSCN1Q16658 493 aaKnown RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 CDO1Q16878 200 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 KCTD19Q17RG1 926 aaPredicted RBP10.07□□□□□ -0.8
RTF1-206ENST00000560447 FNBP1LQ5T0N5 605 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 ANKRD22Q5VYY1 191 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 NUGGCQ68CJ6 796 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 SCYL2Q6P3W7 929 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 C3orf62Q6ZUJ4 267 aa10.07□□□□□ -0.8
RTF1-206ENST00000560447 PDZD4Q76G19 769 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms