RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 BOLA3Q53S33 107 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 ODF2Q5BJF6 829 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 CYP4V2Q6ZWL3 525 aaPredicted RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 CCDC50Q8IVM0 306 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 SLC7A14Q8TBB6 771 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 RAPGEF5Q92565 580 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 FBXO32Q969P5 355 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 RNF25Q96BH1 459 aaPredicted RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 PGAP3Q96FM1 320 aaPredicted RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 RBM41Q96IZ5 413 aaKnown RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 NAP1L3Q99457 506 aaPredicted RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 TTLL2Q9BWV7 592 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 GMIPQ9P107 970 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 PATJQ8NI35 1801 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 SYNJ2BP-COX16A0A087WUM0 186 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 LRRD1A4D1F6 860 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 C2orf71A6NGG8 1288 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 HIDE1A8MVS5 230 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 EFCAB8A8MWE9 144 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 PI4K2BG5E9Z4 385 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 GRM6O15303 877 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 TADA3O75528 432 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 CSPG5O95196 566 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 SPATA31D3P0C874 917 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 KLRC2P26717 231 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 CETN2P41208 172 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 DEUP1Q05D60 604 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 ITIH3Q06033 890 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 NME3Q13232 169 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 PLPP4Q5VZY2 271 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 LILRA6Q6PI73 481 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 SPATA31D4Q6ZUB0 917 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 SLC13A5Q86YT5 568 aaPredicted RBP11.69□□□□□ -0.54
USP3-218ENST00000560202 CMASQ8NFW8 434 aaPredicted RBP11.69□□□□□ -0.54
USP3-218ENST00000560202 ADAM32Q8TC27 787 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 MICAL1Q8TDZ2 1067 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 TEKT4Q8WW24 435 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 HSPH1Q92598 858 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 SLITRK1Q96PX8 696 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 PBX4Q9BYU1 374 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 OSER1Q9NX31 292 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 COX16Q9P0S2 106 aa11.69□□□□□ -0.54
USP3-218ENST00000560202 MAGED2Q9UNF1 606 aaPredicted RBP11.69□□□□□ -0.54
USP3-218ENST00000560202 V9GYY5 206 aaPredicted RBP11.69□□□□□ -0.54
USP3-218ENST00000560202 KRIT1O00522 736 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 FSCN2O14926 492 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 LPXNO60711 386 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 F9P00740 461 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 CSH1P0DML2 217 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 CSH2P0DML3 217 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 RALAP11233 206 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 KDELR1P24390 212 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 PSEN1P49768 467 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 COPS2P61201 443 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 C2orf54Q08AI8 447 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 TWF1Q12792 350 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 CAMK1Q14012 370 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 VEPH1Q14D04 833 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 LLGL1Q15334 1064 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 ERMARDQ5T6L9 678 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 MFSD7Q6UXD7 560 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 SPOCD1Q6ZMY3 1216 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 ANKS1BQ7Z6G8 1248 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 TAC4Q86UU9 113 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 FAM131BQ86XD5 332 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 KCTD6Q8NC69 237 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 DQX1Q8TE96 717 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 RNF139Q8WU17 664 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 SNRNP25Q9BV90 132 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 AP1M1Q9BXS5 423 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 OSBPL8Q9BZF1 889 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 FAM204AQ9H8W3 233 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 TLR8Q9NR97 1041 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 RBM12Q9NTZ6 932 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 PIGVQ9NUD9 493 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP3-218ENST00000560202 ARGLU1Q9NWB6 273 aaPredicted RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 DDIT4Q9NX09 232 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 CLIC5Q9NZA1 410 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 INSL5Q9Y5Q6 135 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 PLXNA4Q9HCM2 1894 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 C3orf70A6NLC5 250 aaPredicted RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 H3BNC9 293 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 MDM4O15151 490 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 IGLV3-25P01717 112 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 ZDHHC11BP0C7U3 371 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 HMGA1P17096 107 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 GBP1P32455 592 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 IRS1P35568 1242 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 ARSEP51690 589 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 EPHB3P54753 998 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 PLD1Q13393 1074 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 GPM6BQ13491 265 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 RAB30Q15771 203 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 TAF12Q16514 161 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 ZC3H12AQ5D1E8 599 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 RSRC2Q7L4I2 434 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 ADAT2Q7Z6V5 191 aaKnown RBP11.68□□□□□ -0.54
USP3-218ENST00000560202 CCDC185Q8N715 623 aa11.68□□□□□ -0.54
USP3-218ENST00000560202 NOA1Q8NC60 698 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms