RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 PRRT4C9JH25 899 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 PIK3R2O00459 728 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 PSMA7O14818 248 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 EIF2DP41214 584 aaKnown RBP18.64■□□□□ 0.57
HDDC3-205ENST00000559898 GRIA2P42262 883 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 TKTL1P51854 596 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 CCDC40Q4G0X9 1142 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 ERMP1Q7Z2K6 904 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 ELOA2Q8IYF1 753 aaPredicted RBP18.64■□□□□ 0.57
HDDC3-205ENST00000559898 ANKRD52Q8NB46 1076 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 EXOC4Q96A65 974 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 OTUB2Q96DC9 234 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 DNMT3LQ9UJW3 386 aa18.64■□□□□ 0.57
HDDC3-205ENST00000559898 TNRC6BQ9UPQ9 1833 aaKnown RBP18.63■□□□□ 0.57
HDDC3-205ENST00000559898 TBC1D3BA6NDS4 549 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 TYRP14679 529 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 CD19P15391 556 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 MRPS21P82921 87 aaKnown RBP18.63■□□□□ 0.57
HDDC3-205ENST00000559898 LMNB2Q03252 620 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 C10orf76Q5T2E6 689 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 EGFLAMQ63HQ2 1017 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 RRAGAQ7L523 313 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 GPR161Q8N6U8 529 aaKnown RBP18.63■□□□□ 0.57
HDDC3-205ENST00000559898 TERB1Q8NA31 727 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 ZC3H10Q96K80 434 aaKnown RBP18.63■□□□□ 0.57
HDDC3-205ENST00000559898 BBS2Q9BXC9 721 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 DNAJC17Q9NVM6 304 aaKnown RBP18.63■□□□□ 0.57
HDDC3-205ENST00000559898 CLEC4EQ9ULY5 219 aa18.63■□□□□ 0.57
HDDC3-205ENST00000559898 O00370 1275 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 CISD3P0C7P0 127 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 TNFRSF4P43489 277 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 PLA2G4AP47712 749 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 RGS7P49802 495 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 YWHAGP61981 247 aaKnown RBP eCLIP18.62■□□□□ 0.57
HDDC3-205ENST00000559898 CAMK4Q16566 473 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 PKDCCQ504Y2 493 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 PLA2G2CQ5R387 149 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 KLHDC10Q6PID8 442 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 CLEC4CQ8WTT0 213 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 FAXDC2Q96IV6 333 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 CEP63Q96MT8 703 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 DEC1Q9P2X7 70 aa18.62■□□□□ 0.57
HDDC3-205ENST00000559898 MBD1Q9UIS9 605 aaPredicted RBP18.62■□□□□ 0.57
HDDC3-205ENST00000559898 CDV3Q9UKY7 258 aaKnown RBP18.62■□□□□ 0.57
HDDC3-205ENST00000559898 CEP192Q8TEP8 1941 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 CACNG3O60359 315 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 LRP3O75074 770 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 BRD2P25440 801 aaKnown RBP18.61■□□□□ 0.57
HDDC3-205ENST00000559898 CORO1AP31146 461 aaKnown RBP18.61■□□□□ 0.57
HDDC3-205ENST00000559898 APBA1Q02410 837 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 ADIGQ0VDE8 80 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 SGO2Q562F6 1265 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 BTBD8Q5XKL5 378 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 TMEM270Q6UE05 265 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 ZNF513Q8N8E2 541 aaPredicted RBP18.61■□□□□ 0.57
HDDC3-205ENST00000559898 OLIG1Q8TAK6 271 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 HMGB4Q8WW32 186 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 EDEM1Q92611 657 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 CNOT6LQ96LI5 555 aaKnown RBP18.61■□□□□ 0.57
HDDC3-205ENST00000559898 KREMEN1Q96MU8 473 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 UBXN6Q9BZV1 441 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 SLC6A17Q9H1V8 727 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 CD93Q9NPY3 652 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 CLIC5Q9NZA1 410 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 MARK1Q9P0L2 795 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 SFMBT1Q9UHJ3 866 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 HOOK1Q9UJC3 728 aaKnown RBP18.61■□□□□ 0.57
HDDC3-205ENST00000559898 AGO1Q9UL18 857 aaKnown RBP18.61■□□□□ 0.57
HDDC3-205ENST00000559898 PCDHB4Q9Y5E5 795 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 PLXND1Q9Y4D7 1925 aa18.61■□□□□ 0.57
HDDC3-205ENST00000559898 TCRBV21S2A2A0A5A6 115 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 SLC12A8A0AV02 714 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 YJEFN3A6XGL0 299 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 PRR5-ARHGAP8B1AHC4 643 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 PATE3B3GLJ2 98 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 WASH3PC4AMC7 463 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 E7ENQ6 273 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 XPO1O14980 1071 aaKnown RBP18.6■□□□□ 0.57
HDDC3-205ENST00000559898 ZBED1O96006 694 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 RALAP11233 206 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 LCP1P13796 627 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 TRIM21P19474 475 aaKnown RBP18.6■□□□□ 0.57
HDDC3-205ENST00000559898 GBP1P32455 592 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 MPLP40238 635 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 ARHGAP8P85298 464 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 STIM1Q13586 685 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 PM20D1Q6GTS8 502 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 GRAMD4Q6IC98 578 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 KIAA1211LQ6NV74 962 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 PMF1Q6P1K2 205 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 DENND1CQ8IV53 801 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 TRIM59Q8IWR1 403 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 PPM1KQ8N3J5 372 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 ZNF276Q8N554 614 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 SRRTQ9BXP5 876 aaKnown RBP18.6■□□□□ 0.57
HDDC3-205ENST00000559898 METTL14Q9HCE5 456 aaKnown RBP18.6■□□□□ 0.57
HDDC3-205ENST00000559898 CD248Q9HCU0 757 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 LSM7Q9UK45 103 aaKnown RBP18.6■□□□□ 0.57
HDDC3-205ENST00000559898 RAD54BQ9Y620 910 aa18.6■□□□□ 0.57
HDDC3-205ENST00000559898 A0A1W2PQF6 199 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms