RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 XPO4Q9C0E2 1151 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 POLR3FQ9H1D9 316 aaPredicted RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 SP110Q9HB58 689 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 FAM105AQ9NUU6 356 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PRMT7Q9NVM4 692 aaPredicted RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 SUCLA2Q9P2R7 463 aaPredicted RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 TPX2Q9ULW0 747 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 TBX20Q9UMR3 447 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 NUB1Q9Y5A7 615 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.49□□□□□ -1.53
LDLR-209ENST00000558528 TIMM13Q9Y5L4 95 aaPredicted RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 A0A0G2JMZ2 1700 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CHD9Q3L8U1 2897 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 SMIM35A0A1B0GVV1 85 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 C17orf102A2RUQ5 167 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 GTPBP10A4D1E9 387 aaKnown RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 LRRIQ4A6NIV6 560 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 LGALS16A8MUM7 142 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 RSPH10B2B2RC85 870 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 AKR1B15C9JRZ8 316 aaPredicted RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 M0QZ92 97 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 RNF225M0QZC1 329 aaPredicted RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 SLC16A4O15374 487 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 DEAF1O75398 565 aaPredicted RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 PIGRP01833 764 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CCDC172P0C7W6 258 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 RSPH10BP0C881 870 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 MYBP10242 640 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CYBAP13498 195 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 LCP1P13796 627 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 IFNGR1P15260 489 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 C5AR1P21730 350 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 GLRA2P23416 452 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 KLRC1P26715 233 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 MARK3P27448 753 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CST5P28325 142 aaPredicted RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 CTGFP29279 349 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 GTF2H1P32780 548 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CHKAP35790 457 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CTSKP43235 329 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 FNTBP49356 437 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 AGFG1P52594 562 aaKnown RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 KIF11P52732 1056 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 RAC1P63000 192 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 PRKCZQ05513 592 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 MAPK7Q13164 816 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 BLMHQ13867 455 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 PDCD1Q15116 288 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 KRT31Q15323 416 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 LLGL1Q15334 1064 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 GRIK4Q16099 956 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 UAP1L1Q3KQV9 507 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 PRAMEF19Q5SWL8 479 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 IZUMO3Q5VZ72 239 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 TAF2Q6P1X5 1199 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 MTHFD1LQ6UB35 978 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CYP2R1Q6VVX0 501 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 RSRC2Q7L4I2 434 aaKnown RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 MAATS1Q7Z4T9 603 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 CNGA4Q8IV77 575 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 SPNS2Q8IVW8 549 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 VSTM4Q8IW00 320 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 DMRTC2Q8IXT2 367 aaPredicted RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 CMIPQ8IY22 773 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 NLGN4XQ8N0W4 816 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 DAW1Q8N136 415 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 METTL13Q8N6R0 699 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 C7orf31Q8N865 590 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 ARRDC4Q8NCT1 418 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 GIMAP7Q8NHV1 300 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 PRPF31Q8WWY3 499 aaKnown RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 TMEM143Q96AN5 459 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 ERGIC2Q96RQ1 377 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 FIZ1Q96SL8 496 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 TBCBQ99426 244 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 SLC12A9Q9BXP2 914 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 HDAC8Q9BY41 377 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 B3GNT5Q9BYG0 378 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 GCOM2Q9BZD3 368 aaPredicted RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 UPF3AQ9H1J1 476 aaKnown RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 VPS11Q9H270 941 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 NDST4Q9H3R1 872 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 EPHX3Q9H6B9 360 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 ACSS3Q9H6R3 686 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 BCAS3Q9H6U6 928 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 ZMAT4Q9H898 229 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 SMURF1Q9HCE7 757 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 STARD7Q9NQZ5 370 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 AGPAT3Q9NRZ7 376 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 DMAC2Q9NW81 257 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 ZNHIT6Q9NWK9 470 aaKnown RBP5.48□□□□□ -1.53
LDLR-209ENST00000558528 ARHGAP28Q9P2N2 729 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 POLHQ9Y253 713 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 PCDHGB6Q9Y5F9 930 aa5.48□□□□□ -1.53
LDLR-209ENST00000558528 A0A1B0GVC2 190 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 A0A1W2PQJ5 194 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TRIM49BA6NDI0 452 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ZNF233A6NK53 670 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 HAS3O00219 553 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms