RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GJB1P08034 283 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 MMP10P09238 476 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 TYK2P29597 1187 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 TCEAL1Q15170 157 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 HSF5Q4G112 596 aaPredicted RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 TRIML2Q8N7C3 387 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 CCNYQ8ND76 341 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 SLC35B2Q8TB61 432 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 DCUN1D5Q9BTE7 237 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 INO80BQ9C086 356 aaPredicted RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 FAM192AQ9GZU8 254 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 WDR55Q9H6Y2 383 aaPredicted RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 A0A088AWK7 358 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 MT-CO1P00395 513 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 UQCRBP14927 111 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 POLR2BP30876 1174 aaKnown RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 MRPS5P82675 430 aaKnown RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 FSTL1Q12841 308 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 EMC2Q15006 297 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 PGM5Q15124 567 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 CRY2Q49AN0 593 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 LAYNQ6UX15 382 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 TAS1R3Q7RTX0 852 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 PHF13Q86YI8 300 aaPredicted RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 C10orf107Q8IVU9 208 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 C4orf19Q8IY42 314 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 C7orf31Q8N865 590 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 SLC7A3Q8WY07 619 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 NR1H4Q96RI1 486 aaPredicted RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 CAAP1Q9H8G2 361 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 CYP26B1Q9NR63 512 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 LZTS1Q9Y250 596 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 DRG1Q9Y295 367 aaKnown RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 WDR27A2RRH5 827 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 STX16-NPEPL1H3BU86 382 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 SRGAP2BP0DMP2 458 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 ETV4P43268 484 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 GLRBP48167 497 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 OLIG2Q13516 323 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 KRT72Q14CN4 511 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 C12orf56Q8IXR9 622 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 DCLK2Q8N568 766 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 NKD2Q969F2 451 aaPredicted RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 PPWD1Q96BP3 646 aaKnown RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 WNK4Q96J92 1243 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 HAPLN2Q9GZV7 340 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 FARP1Q9Y4F1 1045 aaPredicted RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 SIN3BO75182 1162 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 NR3C2P08235 984 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 ADORA2AP29274 412 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 YWHAZP63104 245 aaKnown RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 IGBP1P78318 339 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 PPM1LQ5SGD2 360 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 FRMD7Q6ZUT3 714 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 PODNQ7Z5L7 613 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 AMIGO2Q86SJ2 522 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 TTC13Q8NBP0 860 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 ZFAND2BQ8WV99 257 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 CNKSR2Q8WXI2 1034 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 KLC2Q9H0B6 622 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 CHCHD3Q9NX63 227 aaKnown RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 ADA2Q9NZK5 511 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 ANKRD33BA6NCL7 494 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 TPP1O14773 563 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 TBXAS1P24557 533 aaPredicted RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 TPP2P29144 1249 aaPredicted RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 CAP2P40123 477 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 MLH1P40692 756 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 CHN2P52757 468 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 FBXL19Q6PCT2 694 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 MYLK4Q86YV6 388 aaPredicted RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 TRIM42Q8IWZ5 723 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 ATP2A3Q93084 1043 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 AZIN2Q96A70 460 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 CDRT15Q96T59 188 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 PDCD2LQ9BRP1 358 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 DNAAF2Q9NVR5 837 aaKnown RBP11.72□□□□□ -0.53
LDLR-208ENST00000558518 CDH22Q9UJ99 828 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 POMPQ9Y244 141 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 RIPK3Q9Y572 518 aa11.72□□□□□ -0.53
LDLR-208ENST00000558518 A0A1B0GTW7 788 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 MAGEC1O60732 1142 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 ETFBP38117 255 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 CCR10P46092 362 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 ALDH1A3P47895 512 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 JAK3P52333 1124 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 KRT76Q01546 638 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 PTP4A2Q12974 167 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 GSTA3Q16772 222 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 NADK2Q4G0N4 442 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 UNC5AQ6ZN44 842 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 RELL1Q8IUW5 271 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 SPNS2Q8IVW8 549 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 ARFGAP1Q8N6T3 406 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 FAM172AQ8WUF8 416 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 IFT43Q96FT9 208 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 PIWIL1Q96J94 861 aaKnown RBP11.71□□□□□ -0.53
LDLR-208ENST00000558518 SCYL1Q96KG9 808 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 APOL2Q9BQE5 337 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 RNF146Q9NTX7 359 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms