RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	HMOX2	P30519	316 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CHRNA5	P30532	468 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PSEN1	P49768	467 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	NEK2	P51955	445 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ITGA9	Q13797	1035 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	LBR	Q14739	615 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	IMPG1	Q17R60	797 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KIZ	Q2M2Z5	673 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ANKRD22	Q5VYY1	191 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TDRD10	Q5VZ19	366 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DENND1B	Q6P3S1	775 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DSTYK	Q6XUX3	929 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	UTS2B	Q765I0	119 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	METTL23	Q86XA0	190 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	FAM71A	Q8IYT1	594 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	BEST2	Q8NFU1	509 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZC3H15	Q8WU90	426 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZBTB18	Q99592	522 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KLHL25	Q9H0H3	589 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	BTBD7	Q9P203	1132 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMEM59L	Q9UK28	342 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SHOC2	Q9UQ13	582 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ACTL7B	Q9Y614	415 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CYP3A7-CYP3A51P	A0A087WV96	503 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PRR5-ARHGAP8	B1AHC4	643 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005		F8W8V4	182 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	AGRP	O00253	132 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	NFIB	O00712	420 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DGAT1	O75907	488 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PARN	O95453	639 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KRT75	O95678	551 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRUB2	O95900	331 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SERPINE1	P05121	402 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	C6orf222	P0C671	652 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CYP3A7	P24462	503 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ECHS1	P30084	290 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MSX2	P35548	267 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SKIV2L2	P42285	1042 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	RPS6KA3	P51812	740 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	C21orf59	P57076	290 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ARHGAP8	P85298	464 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PPID	Q08752	370 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRAF2	Q12933	501 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	PTK2B	Q14289	1009 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DGKD	Q16760	1214 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	GALNTL6	Q49A17	601 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	RALGPS1	Q5JS13	557 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	GRTP1	Q5TC63	336 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DCAF15	Q66K64	600 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	HHIPL2	Q6UWX4	724 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC51A	Q86UW1	340 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SPATA6L	Q8N4H0	392 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	KY	Q8NBH2	561 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	NETO2	Q8NC67	525 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	RIN3	Q8TB24	985 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	RMND5B	Q96G75	393 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	ZBTB45	Q96K62	511 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DNAJC1	Q96KC8	554 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	RIT2	Q99578	217 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	SIK2	Q9H0K1	926 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	C2orf40	Q9H1Z8	148 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	CISH	Q9NSE2	258 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	STK32B	Q9NY57	414 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	VAV3	Q9UKW4	847 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	MYH2	Q9UKX2	1941 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	DMTF1	Q9Y222	760 aa		5.14	□□□□□ -1.59
SYNE2-223	ENST00000557005	BCL9	O00512	1426 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	GAK	O14976	1311 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	WDR46	O15213	610 aa	Known RBP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	SERPINA6	P08185	405 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	F7	P08709	466 aa	Predicted RBP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	IL1R1	P14778	569 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	KDELR1	P24390	212 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	TRPC1	P48995	793 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	USP4	Q13107	963 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	GRM1	Q13255	1194 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	TBCEL	Q5QJ74	424 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	MFSD5	Q6N075	450 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	OLFML1	Q6UWY5	402 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	SV2A	Q7L0J3	742 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	TMC2	Q8TDI7	906 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	CASP10	Q92851	521 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	FAM210A	Q96ND0	272 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	NR1H4	Q96RI1	486 aa	Predicted RBP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	PRPF18	Q99633	342 aa	Known RBP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	APOL2	Q9BQE5	337 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	PAIP1	Q9H074	479 aa	Known RBP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	SP110	Q9HB58	689 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	FBXO28	Q9NVF7	368 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	DPP3	Q9NY33	737 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	UBP1	Q9NZI7	540 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	PRKAG3	Q9UGI9	489 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	AFF4	Q9UHB7	1163 aa	Known RBP	5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	SLC12A6	Q9UHW9	1150 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	MYRF	Q9Y2G1	1151 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	PCDHA2	Q9Y5H9	948 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	TJP1	Q07157	1748 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	ATP8B3	O60423	1300 aa		5.13	□□□□□ -1.59
SYNE2-223	ENST00000557005	CHD4	Q14839	1912 aa		5.13	□□□□□ -1.59

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