RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SH3RF2Q8TEC5 729 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 CACTINQ8WUQ7 758 aaKnown RBP10.69□□□□□ -0.7
SCFD1-220ENST00000556486 FAM213AQ9BRX8 229 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 CCDC86Q9H6F5 360 aaKnown RBP10.69□□□□□ -0.7
SCFD1-220ENST00000556486 TMEM206Q9H813 350 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 RBAKQ9NYW8 714 aaPredicted RBP10.69□□□□□ -0.7
SCFD1-220ENST00000556486 CLIC4Q9Y696 253 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 TENM4Q6N022 2769 aa10.69□□□□□ -0.7
SCFD1-220ENST00000556486 PTPRBP23467 1997 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 TCRBV21S2A2A0A5A6 115 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 HUS1O60921 280 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 ITGB3P05106 788 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 FTH1P19P0C7X4 201 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 CD59P13987 128 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 PFKLP17858 780 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 CYP2F1P24903 491 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 PCSK1P29120 753 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 POLR2BP30876 1174 aaKnown RBP10.68□□□□□ -0.7
SCFD1-220ENST00000556486 MAGEA11P43364 429 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 LHX1P48742 406 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 CASP5P51878 434 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 TFAMQ00059 246 aaKnown RBP10.68□□□□□ -0.7
SCFD1-220ENST00000556486 RPL6Q02878 288 aaKnown RBP10.68□□□□□ -0.7
SCFD1-220ENST00000556486 CENPCQ03188 943 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 FAM160A1Q05DH4 1040 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 GFPT1Q06210 699 aaPredicted RBP10.68□□□□□ -0.7
SCFD1-220ENST00000556486 RESTQ13127 1097 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 FAM171BQ6P995 826 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 SLC23A3Q6PIS1 610 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 C11orf74Q86VG3 221 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 C12orf40Q86WS4 652 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 TREML1Q86YW5 311 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 OLIG1Q8TAK6 271 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 WHAMMQ8TF30 809 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 EXOC4Q96A65 974 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 FAM84AQ96KN4 292 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 SPACA7Q96KW9 195 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 SIX4Q9UIU6 781 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 PILRBQ9UKJ0 227 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 AGAP1Q9UPQ3 857 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 PLXND1Q9Y4D7 1925 aa10.68□□□□□ -0.7
SCFD1-220ENST00000556486 KALRNO60229 2985 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 TRAV19A0A0A6YYK7 116 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 VPS37CA5D8V6 355 aaPredicted RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 CYSRT1A8MQ03 144 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 H0Y626 953 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 ALDH1A2O94788 518 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 TRIM16O95361 564 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 GCNT3O95395 438 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 USP17L7P0C7H9 530 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 SYT1P21579 422 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 DNAJA1P31689 397 aaKnown RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 RDXP35241 583 aaKnown RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 WASP42768 502 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 RBP5P82980 135 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 ZXDBP98169 803 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 MYL7Q01449 175 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 SLC39A14Q15043 492 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 TRIP6Q15654 476 aaKnown RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 SOWAHAQ2M3V2 549 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 GAB4Q2WGN9 574 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 SCARA3Q6AZY7 606 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 CNNM4Q6P4Q7 775 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 NOP9Q86U38 636 aaKnown RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 IL17RCQ8NAC3 791 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 ZSWIM2Q8NEG5 633 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 SAAL1Q96ER3 474 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 INTS4Q96HW7 963 aaKnown RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 CBWD1Q9BRT8 395 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 DDX43Q9NXZ2 648 aaKnown RBP10.67□□□□□ -0.7
SCFD1-220ENST00000556486 SLC6A14Q9UN76 642 aa10.67□□□□□ -0.7
SCFD1-220ENST00000556486 A0A087X0B3 334 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 FAM221BA6H8Z2 402 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 ADAM23O75077 832 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 CYP17A1P05093 508 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 FAM163BP0C2L3 166 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 NASPP49321 788 aaPredicted RBP10.66□□□□□ -0.7
SCFD1-220ENST00000556486 SURF1Q15526 300 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 MAPRE1Q15691 268 aaKnown RBP10.66□□□□□ -0.7
SCFD1-220ENST00000556486 ZNF423Q2M1K9 1284 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 VSTM1Q6UX27 236 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 FILIP1Q7Z7B0 1213 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 SCN4BQ8IWT1 228 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 ADGRF2Q8IZF7 708 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 GPD1LQ8N335 351 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 CSGALNACT2Q8N6G5 542 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 KBTBD7Q8WVZ9 684 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 SPATA17Q96L03 361 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 CLIC6Q96NY7 704 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 FGFBP2Q9BYJ0 223 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 MTMR12Q9C0I1 747 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 TNMDQ9H2S6 317 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 CUEDC2Q9H467 287 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 KIAA1586Q9HCI6 787 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 PDE11AQ9HCR9 933 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 CD93Q9NPY3 652 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 INTS13Q9NVM9 706 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 KBTBD4Q9NVX7 518 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 SMPD4Q9NXE4 827 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 GCNT4Q9P109 453 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms