RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SECISBP2LQ93073 1101 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 GBP4Q96PP9 640 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 ULBP1Q9BZM6 244 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 ARHGEF4Q9NR80 690 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 WDR35Q9P2L0 1181 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 STRIP2Q9ULQ0 834 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 MMP17Q9ULZ9 603 aa16.83■□□□□ 0.28
CCDC88C-209ENST00000554872 SCAMP3O14828 347 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 HRO43593 1189 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 TULP3O75386 442 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 APBB3O95704 486 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 IRF1P10914 325 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 KIR2DL1P43626 348 aaPredicted RBP16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 DMC1Q14565 340 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 TMEM25Q86YD3 366 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 FAM217AQ8IXS0 508 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 SIX6OS1Q8N1H7 587 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 STK32AQ8WU08 396 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 PLD4Q96BZ4 506 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 IPO9Q96P70 1041 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 MARCH2Q9P0N8 246 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 APEX2Q9UBZ4 518 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 STARD13Q9Y3M8 1113 aa16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 HBS1LQ9Y450 684 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-209ENST00000554872 MDM4O15151 490 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 FBXO21O94952 628 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 LATS1O95835 1130 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 KLKB1P03952 638 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 BRD2P25440 801 aaKnown RBP16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 CHKAP35790 457 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 SLC6A11P48066 632 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 MFAP3P55082 362 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 DAOAP59103 153 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 MESP2Q0VG99 397 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 TRIP4Q15650 581 aaPredicted RBP16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 MAN2A1Q16706 1144 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 EXOC3L4Q17RC7 722 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 MSANTD2Q6P1R3 559 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 GBP6Q6ZN66 633 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 NUDT18Q6ZVK8 323 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 RASSF3Q86WH2 238 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 CPXM2Q8N436 756 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 TERB1Q8NA31 727 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 UBA3Q8TBC4 463 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 GAB3Q8WWW8 586 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 ABCC13Q9NSE7 274 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 DEC1Q9P2X7 70 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 NCDNQ9UBB6 729 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 FBXO10Q9UK96 956 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 RAB23Q9ULC3 237 aa16.81■□□□□ 0.28
CCDC88C-209ENST00000554872 SPTBN4Q9H254 2564 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 YJEFN3A6XGL0 299 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 E7ENQ6 273 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 M0QYV0 167 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 SART1O43290 800 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 GABBR2O75899 941 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 PENKP01210 267 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 RETP07949 1114 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 DGKEP52429 567 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 EFEMP1Q12805 493 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 SIM2Q14190 667 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 BSPRYQ5W0U4 402 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 PMF1Q6P1K2 205 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 RSRC2Q7L4I2 434 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 BEND5Q7L4P6 421 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 MIB1Q86YT6 1006 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 IL17RCQ8NAC3 791 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 SHC3Q92529 594 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 LOXL4Q96JB6 756 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 XPO6Q96QU8 1125 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 IRX2Q9BZI1 471 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 UBE2TQ9NPD8 197 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 RASAL2Q9UJF2 1139 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 STOML2Q9UJZ1 356 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 GMEB2Q9UKD1 530 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 NUDT5Q9UKK9 219 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 DCHS1Q96JQ0 3298 aa16.8■□□□□ 0.28
CCDC88C-209ENST00000554872 MYOFQ9NZM1 2061 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 AXIN1O15169 862 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 MED7O43513 233 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 TYRP14679 529 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 TGM1P22735 817 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 PON1P27169 355 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 GPD2P43304 727 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 MTIF2P46199 727 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 ZNF445P59923 1031 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 CRY1Q16526 586 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 TPD52L1Q16890 204 aaPredicted RBP16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 ANO4Q32M45 955 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 TRMT11Q7Z4G4 463 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 ZC3H10Q96K80 434 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 BBS2Q9BXC9 721 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 SLC27A6Q9Y2P4 619 aa16.79■□□□□ 0.28
CCDC88C-209ENST00000554872 NEDD8-MDP1E9PL57 170 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 RPP40O75818 363 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 IGLV3-27P01718 113 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 SLC9A1P19634 815 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 CORO1AP31146 461 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 ACADSBP45954 432 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 NNTQ13423 1086 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms