RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 ZNF883P0CG24 379 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 PRKCSHP14314 528 aaPredicted RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 PCSK1P29120 753 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 GTF2H1P32780 548 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 VAMP7P51809 220 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 MARSP56192 900 aaKnown RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 USP46P62068 366 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 RPL6Q02878 288 aaKnown RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 TPD52L1Q16890 204 aaPredicted RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 DUOXA2Q1HG44 320 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 ZSCAN23Q3MJ62 389 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 DENND5BQ6ZUT9 1274 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 TRMT11Q7Z4G4 463 aaKnown RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 OSTM1Q86WC4 334 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 TTC30AQ86WT1 665 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 SPATA2LQ8IUW3 424 aaPredicted RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 NAXDQ8IW45 347 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 FAM114A1Q8IWE2 563 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 SCUBE3Q8IX30 993 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 C1orf127Q8N9H9 656 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 RDH13Q8NBN7 331 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 BAHD1Q8TBE0 780 aaPredicted RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 MDM1Q8TC05 714 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 PARD3BQ8TEW8 1205 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 HNRNPLLQ8WVV9 542 aaKnown RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 CCDC127Q96BQ5 260 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 OTUB2Q96DC9 234 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 ANKRD36BP1Q96IX9 119 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 MED15Q96RN5 788 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 BPIFA3Q9BQP9 254 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 SRRTQ9BXP5 876 aaKnown RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 THAP9Q9H5L6 903 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 ARHGEF4Q9NR80 690 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 INTS13Q9NVM9 706 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 EHD2Q9NZN4 543 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 TRPM5Q9NZQ8 1165 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 TBC1D14Q9P2M4 693 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 SUSD2Q9UGT4 822 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 ARMCX3Q9UH62 379 aaPredicted RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 ITGA11Q9UKX5 1188 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 PCOLCE2Q9UKZ9 415 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 APOBEC2Q9Y235 224 aaKnown RBP8.19□□□□□ -1.1
ABCD4-220ENST00000553998 RAXQ9Y2V3 346 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 PCDHB9Q9Y5E1 797 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 MYO16Q9Y6X6 1858 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 NUP205Q92621 2012 aa8.19□□□□□ -1.1
ABCD4-220ENST00000553998 KIAA1549LQ6ZVL6 1849 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 E2F8A0AVK6 867 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 LRRIQ3A6PVS8 624 aaPredicted RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 HOXC11O43248 304 aaPredicted RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 ADH1CP00326 375 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 TNNC2P02585 160 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 DLATP10515 647 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 ADH5P11766 374 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 TNNI1P19237 187 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 ACAT1P24752 427 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 POLR2BP30876 1174 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 WNT7BP56706 349 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 NOP14P78316 857 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 RBP5P82980 135 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 TFAMQ00059 246 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 MYL5Q02045 173 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 GAD2Q05329 585 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 CAMK2BQ13554 666 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 CCDC142Q17RM4 750 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 SOWAHAQ2M3V2 549 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 CCDC40Q4G0X9 1142 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 PREPLQ4J6C6 727 aaPredicted RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 SCARA3Q6AZY7 606 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 C4orf50Q6ZRC1 276 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 C11orf57Q6ZUT1 292 aaPredicted RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 METTL3Q86U44 580 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 DDX42Q86XP3 938 aaKnown RBP eCLIP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 PGBD3Q8N328 593 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 PNPLA1Q8N8W4 532 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 LSM14AQ8ND56 463 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 OR2I1PQ8NGU4 316 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 PLEKHO2Q8TD55 490 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 DNASE2BQ8WZ79 361 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 C8orf48Q96LL4 319 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 GABRG3Q99928 467 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 GZF1Q9H116 711 aaPredicted RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 TOR4AQ9NXH8 423 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 CALCOCO1Q9P1Z2 691 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 MAGEC2Q9UBF1 373 aaPredicted RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 AGAP1Q9UPQ3 857 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 R3HCC1Q9Y3T6 440 aaKnown RBP8.18□□□□□ -1.1
ABCD4-220ENST00000553998 CPQQ9Y646 472 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 PCDH15Q96QU1 1955 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 APC2O95996 2303 aa8.18□□□□□ -1.1
ABCD4-220ENST00000553998 MAST4O15021 2626 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 TBC1D3BA6NDS4 549 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 SMTNL1A8MU46 457 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 PMM2O15305 246 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 P4HA2O15460 535 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 ZIC2O95409 532 aaPredicted RBP8.17□□□□□ -1.1
ABCD4-220ENST00000553998 STAU1O95793 577 aaKnown RBP8.17□□□□□ -1.1
ABCD4-220ENST00000553998 ITGB3P05106 788 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 FAM163BP0C2L3 166 aa8.17□□□□□ -1.1
ABCD4-220ENST00000553998 EEF1GP26641 437 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms