RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 KCTD13Q8WZ19 329 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 SUSD3Q96L08 255 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 C9orf72Q96LT7 481 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 CYLDQ9NQC7 956 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 DRG1Q9Y295 367 aaKnown RBP13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 EFR3BQ9Y2G0 817 aa13.27□□□□□ -0.29
VIPAS39-206ENST00000553888 TCRBV7S3A2A0A539 114 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 TLDC2A0PJX2 215 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 NT5C1B-RDH14C9J2C7 533 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 I6L893 689 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DNM1LO00429 736 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 ENPP3O14638 875 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DAB1O75553 588 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 CYP11A1P05108 521 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 GOT1P17174 413 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 CYP2F1P24903 491 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DAOAP59103 153 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM189BP81408 668 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DSC1Q08554 894 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 FASTKD3Q14CZ7 662 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC25A52Q3SY17 297 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 SDHAF4Q5VUM1 108 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DENND2CQ68D51 928 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM171BQ6P995 826 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 LRIG3Q6UXM1 1119 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 RINLQ6ZS11 566 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC7A14Q8TBB6 771 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 SMARCD1Q96GM5 515 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 ACBD6Q9BR61 282 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DNAI2Q9GZS0 605 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 PAK6Q9NQU5 681 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DNALI1O14645 258 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 EOMESO95936 686 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 MYZAPP0CAP1 466 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 CCL5P13501 91 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 RARGP13631 454 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 HPDP32754 393 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 RPL22P35268 128 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 GBE1Q04446 702 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC10A2Q12908 348 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 P3H4Q92791 437 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 ATP6V1G3Q96LB4 118 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 CWC15Q9P013 229 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 PATJQ8NI35 1801 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 ERICH4A6NGS2 130 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 FOXO6A8MYZ6 492 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 H7C0C1 242 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 MDM4O15151 490 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 AMPD1P23109 780 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 GBP1P32455 592 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 ATP5OP48047 213 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 NOMO1Q15155 1222 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DARS2Q6PI48 645 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 CAPN12Q6ZSI9 719 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 DEFB128Q7Z7B8 93 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 TEKT4Q8WW24 435 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 RSAD2Q8WXG1 361 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 NPY6RQ99463 290 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 RABEP2Q9H5N1 569 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 SNX10Q9Y5X0 201 aa13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 MRPL42Q9Y6G3 142 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-206ENST00000553888 FNDC1Q4ZHG4 1894 aaPredicted RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 MCF2LO15068 1137 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM163BP0C2L3 166 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 NCAM1P13591 858 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 GPR15P49685 360 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 LMNB2Q03252 620 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 YWHAHQ04917 246 aaPredicted RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC39A12Q504Y0 691 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 PLEKHG4Q58EX7 1191 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 RAB41Q5JT25 222 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 CEP57Q86XR8 500 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 PGLYRP2Q96PD5 576 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 NRDE2Q9H7Z3 1164 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 POPDC2Q9HBU9 364 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 SHROOM3Q8TF72 1996 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 APOL1O14791 398 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 CAPN9O14815 690 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 INPPL1O15357 1258 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 SCNN1AP37088 669 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 CTCFP49711 727 aaPredicted RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 ARHGEF6Q15052 776 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 PDK2Q15119 407 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 DPYSL2Q16555 572 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 RNASEH2BQ5TBB1 312 aaKnown RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 URGCPQ8TCY9 931 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 DIS3LQ8TF46 1054 aaKnown RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 UROC1Q96N76 676 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 CSPG4P5Q96PW8 444 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 SLC2A13Q96QE2 648 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 PCDH9Q9HC56 1237 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 NINJ2Q9NZG7 142 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 FZD10Q9ULW2 581 aa13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 NOVA2Q9UNW9 492 aaKnown RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 KIAA0100Q14667 2235 aaKnown RBP13.25□□□□□ -0.29
VIPAS39-206ENST00000553888 FAM72CH0Y354 149 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 ZBED1O96006 694 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 CYP2C18P33260 490 aa13.24□□□□□ -0.29
VIPAS39-206ENST00000553888 NOS2P35228 1153 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms