RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 MMP8P22894 467 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 MST1P26927 711 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 ATICP31939 592 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 ALDH5A1P51649 535 aaPredicted RBP3.91□□□□□ -1.78
VRK1-202ENST00000553683 COPB1P53618 953 aaKnown RBP3.91□□□□□ -1.78
VRK1-202ENST00000553683 GPC5P78333 572 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 BTKQ06187 659 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 PICALMQ13492 652 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 ATP1A4Q13733 1029 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 MTX3Q5HYI7 312 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 CEP78Q5JTW2 689 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 LRCH2Q5VUJ6 765 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 ARL6IP4Q66PJ3 421 aaKnown RBP3.91□□□□□ -1.78
VRK1-202ENST00000553683 ABLIM2Q6H8Q1 611 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 ANO7Q6IWH7 933 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 SLC18B1Q6NT16 456 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 TMEM65Q6PI78 240 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 CLEC9AQ6UXN8 241 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 DEF8Q6ZN54 512 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 DCDC5Q6ZRR9 648 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 FSTL5Q8N475 847 aaPredicted RBP3.91□□□□□ -1.78
VRK1-202ENST00000553683 CCDC33Q8N5R6 958 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 FAM71DQ8N9W8 422 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 SMG7Q92540 1137 aaKnown RBP3.91□□□□□ -1.78
VRK1-202ENST00000553683 C5orf34Q96MH7 638 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 TBCBQ99426 244 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 ZNF700Q9H0M5 742 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 TNFRSF18Q9Y5U5 241 aa3.91□□□□□ -1.78
VRK1-202ENST00000553683 USP12O75317 370 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 RNF8O76064 485 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 ARP10275 920 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 CYP2D6P10635 497 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 GABRB3P28472 473 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 DUSP1P28562 367 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 TBX4P57082 545 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 HSF1Q00613 529 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 NSUN2Q08J23 767 aaKnown RBP eCLIP3.9□□□□□ -1.79
VRK1-202ENST00000553683 CCDC15Q0P6D6 951 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 GPS1Q13098 491 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 FHL3Q13643 280 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 KCNB1Q14721 858 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 TRIP6Q15654 476 aaKnown RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 MAPKAPK3Q16644 382 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 AASDHQ4L235 1098 aaPredicted RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 IZUMO3Q5VZ72 239 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 RANBP10Q6VN20 620 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 YTHDF3Q7Z739 585 aaKnown RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 CLASRPQ8N2M8 674 aaKnown RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 OR2C3Q8N628 320 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 MAFAQ8NHW3 353 aaPredicted RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 BCAS4Q8TDM0 211 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 DDB2Q92466 427 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 RPL36ALQ969Q0 106 aaKnown RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 HS6ST2Q96MM7 605 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 TMEM8AQ9HCN3 771 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 SCAF8Q9UPN6 1271 aaKnown RBP3.9□□□□□ -1.79
VRK1-202ENST00000553683 FAM50BQ9Y247 325 aa3.9□□□□□ -1.79
VRK1-202ENST00000553683 SMIM35A0A1B0GVV1 85 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 E5RJQ4 531 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 CLIC1O00299 241 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 DSCR3O14972 297 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 GLP2RO95838 553 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 TMIGD3P0DMS9 266 aaPredicted RBP3.89□□□□□ -1.79
VRK1-202ENST00000553683 NTSR1P30989 418 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 DEUP1Q05D60 604 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 MFSD13AQ14CX5 517 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 TWIST1Q15672 202 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 FAM209BQ5JX69 171 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 DGKKQ5KSL6 1271 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 FAM90A2PQ658T7 463 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 ZNF626Q68DY1 528 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 ZNF425Q6IV72 752 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 C11orf87Q6NUJ2 197 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 HIBCHQ6NVY1 386 aaPredicted RBP3.89□□□□□ -1.79
VRK1-202ENST00000553683 MIS18BP1Q6P0N0 1132 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 CRTC1Q6UUV9 634 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 CCDC28AQ8IWP9 274 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 C11orf44Q8N8P7 122 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 HELLSQ9NRZ9 838 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 TUBA8Q9NY65 449 aaPredicted RBP3.89□□□□□ -1.79
VRK1-202ENST00000553683 RGL1Q9NZL6 768 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 PI4KBQ9UBF8 816 aa3.89□□□□□ -1.79
VRK1-202ENST00000553683 ZMYND8Q9ULU4 1186 aaPredicted RBP3.89□□□□□ -1.79
VRK1-202ENST00000553683 FCHO1O14526 889 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 MOSPD3O75425 235 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 VIPP01282 170 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 TNFSF4P23510 183 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 ATP5F1P24539 256 aaPredicted RBP3.88□□□□□ -1.79
VRK1-202ENST00000553683 PTGER1P34995 402 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 ZNF81P51508 661 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 JAK3P52333 1124 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 ZNF268Q14587 947 aaPredicted RBP3.88□□□□□ -1.79
VRK1-202ENST00000553683 FAM110CQ1W6H9 321 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 KLHDC7AQ5VTJ3 777 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 RRAGBQ5VZM2 374 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 GRHL2Q6ISB3 625 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 KSR2Q6VAB6 950 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 DEPTORQ8TB45 409 aa3.88□□□□□ -1.79
VRK1-202ENST00000553683 DENND1AQ8TEH3 1009 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms