RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 RGL4Q8IZJ4 473 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 NAT16Q8N8M0 369 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 SPATA20Q8TB22 786 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 MYCBPAPQ8TBZ2 947 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 HNRNPLLQ8WVV9 542 aaKnown RBP12.51□□□□□ -0.41
SRP54-203ENST00000553544 MYLPFQ96A32 169 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 COL26A1Q96A83 441 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 ZNF419Q96HQ0 510 aaPredicted RBP12.51□□□□□ -0.41
SRP54-203ENST00000553544 C8orf48Q96LL4 319 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 CALCOCO1Q9P1Z2 691 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 SUSD2Q9UGT4 822 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 MAPK8IP1Q9UQF2 711 aa12.51□□□□□ -0.41
SRP54-203ENST00000553544 LOC400499M0QZD8 3231 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 ACACAQ13085 2346 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 IGHV1OR15-9A0A0B4J2B8 117 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 F8VP50 259 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 PHACTR2O75167 634 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 TULP3O75386 442 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 HOXB2P14652 356 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 PTPN1P18031 435 aaKnown RBP12.5□□□□□ -0.41
SRP54-203ENST00000553544 NR2F2P24468 414 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 TNNC1P63316 161 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 BIRC3Q13489 604 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 PNOCQ13519 176 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 NCOA4Q13772 614 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 ANO4Q32M45 955 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 WDR45BQ5MNZ6 344 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 CEP135Q66GS9 1140 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 SV2AQ7L0J3 742 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 SLC41A1Q8IVJ1 513 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 NAXDQ8IW45 347 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 PHTF2Q8N3S3 785 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 OR6B3Q8NGW1 331 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 FOXJ1Q92949 421 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 CCDC34Q96HJ3 373 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 PCED1BQ96HM7 432 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 HSPA12BQ96MM6 686 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 TIGD1Q96MW7 591 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 ZDHHC5Q9C0B5 715 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 SNX25Q9H3E2 840 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 KIAA1522Q9P206 1035 aaPredicted RBP12.5□□□□□ -0.41
SRP54-203ENST00000553544 NXF1Q9UBU9 619 aaKnown RBP12.5□□□□□ -0.41
SRP54-203ENST00000553544 FRMD4BQ9Y2L6 1034 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 STARD13Q9Y3M8 1113 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 ADAMTS20P59510 1910 aa12.5□□□□□ -0.41
SRP54-203ENST00000553544 MYO16Q9Y6X6 1858 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 A0A1W2PQF6 199 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 HOXC11O43248 304 aaPredicted RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 GJB3O75712 270 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 RPL13P26373 211 aaKnown RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 YWHAQP27348 245 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 WASP42768 502 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 VAMP7P51809 220 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 CDH8P55286 799 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 SGSM1Q2NKQ1 1148 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 ZNF699Q32M78 642 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 EDRF1Q3B7T1 1238 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 COBLL1Q53SF7 1204 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 C10orf76Q5T2E6 689 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 TOGARAM2Q6ZUX3 1019 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 INTS8Q75QN2 995 aaKnown RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 GLRX5Q86SX6 157 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 ETFBKMTQ8IXQ9 262 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 ELOA2Q8IYF1 753 aaPredicted RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 SMYD4Q8IYR2 804 aaPredicted RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 NUP93Q8N1F7 819 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 SETD7Q8WTS6 366 aaKnown RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 LRIG1Q96JA1 1093 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 GSDMAQ96QA5 445 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 DPEP3Q9H4B8 488 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 SCUBE2Q9NQ36 999 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 CHORDC1Q9UHD1 332 aaPredicted RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 CYP8B1Q9UNU6 501 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 SH3BP1Q9Y3L3 701 aa12.49□□□□□ -0.41
SRP54-203ENST00000553544 SMG1Q96Q15 3661 aaKnown RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 URB1O60287 2271 aaKnown RBP12.49□□□□□ -0.41
SRP54-203ENST00000553544 GOLGA6L4A6NEF3 574 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 A8MXQ7 604 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 ASS1P00966 412 aaKnown RBP12.48□□□□□ -0.41
SRP54-203ENST00000553544 PRCPP42785 496 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 ADAM9Q13443 819 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 ZNF667Q5HYK9 610 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 MDH1BQ5I0G3 518 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 HECTD3Q5T447 861 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 ZNF658Q5TYW1 1059 aaPredicted RBP12.48□□□□□ -0.41
SRP54-203ENST00000553544 SLCO6A1Q86UG4 719 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 TMEM25Q86YD3 366 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 CHPFQ8IZ52 775 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 TERB1Q8NA31 727 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 B3GALNT2Q8NCR0 500 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 PDZD8Q8NEN9 1154 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 MDM1Q8TC05 714 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 IPO4Q8TEX9 1081 aaKnown RBP12.48□□□□□ -0.41
SRP54-203ENST00000553544 OVCA2Q8WZ82 227 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 TAF4BQ92750 862 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 ELMO3Q96BJ8 720 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 SDCBP2Q9H190 292 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 SMYD3Q9H7B4 428 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 SPHK2Q9NRA0 654 aa12.48□□□□□ -0.41
SRP54-203ENST00000553544 TMEM30AQ9NV96 361 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms