RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 STILQ15468 1287 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 MAN2A1Q16706 1144 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 TPD52L1Q16890 204 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 EXOC3L4Q17RC7 722 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 VWA3BQ502W6 1294 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 GBP6Q6ZN66 633 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 ENOSF1Q7L5Y1 443 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 TADA2BQ86TJ2 420 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 MIB1Q86YT6 1006 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 P2RY11Q96G91 374 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 HSFY1Q96LI6 401 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 CDK5RAP1Q96SZ6 601 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 PNKPQ96T60 521 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 CNGB3Q9NQW8 809 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 SPHK2Q9NRA0 654 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 SAMSN1Q9NSI8 373 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 APEX2Q9UBZ4 518 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 AJAP1Q9UKB5 411 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 YJEFN3A6XGL0 299 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 E7ENQ6 273 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 M0QYV0 167 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 HRO43593 1189 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 KRT5P13647 590 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 LCP1P13796 627 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 FNTBP49356 437 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 MFAP3P55082 362 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 DAOAP59103 153 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 KCNMA1Q12791 1236 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 EFEMP1Q12805 493 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 HSP90AA4PQ58FG1 418 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 BSPRYQ5W0U4 402 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 DENND1BQ6P3S1 775 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 LONP2Q86WA8 852 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 FAM114A1Q8IWE2 563 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 RPLP0P6Q8NHW5 317 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 ENOX1Q8TC92 643 aaKnown RBP10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 USP33Q8TEY7 942 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 ZNF606Q8WXB4 792 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 SHC3Q92529 594 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 FAM81BQ96LP2 452 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 TUBGCP2Q9BSJ2 902 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 EPC1Q9H2F5 836 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 NDST4Q9H3R1 872 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 ACP6Q9NPH0 428 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 SCUBE2Q9NQ36 999 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 MARK1Q9P0L2 795 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 MARCH2Q9P0N8 246 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 RASAL2Q9UJF2 1139 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 LSM7Q9UK45 103 aaKnown RBP10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 GPR179Q6PRD1 2367 aa10.77□□□□□ -0.69
CCDC88C-206ENST00000553437 MIA3Q5JRA6 1907 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 SLC12A8A0AV02 714 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 KCNJ18B7U540 433 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 GOLGA6L22H0YM25 854 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 PIK3R2O00459 728 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 TRIM24O15164 1050 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 TULP3O75386 442 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 KAT7O95251 611 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 GRIA2P42262 883 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 COG7P83436 770 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 GOLGA8FQ08AF8 430 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 GOLGA8DPQ0D2H9 430 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 KCNJ12Q14500 433 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 TRIP4Q15650 581 aaPredicted RBP10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 MEA1Q16626 185 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 ARHGAP44Q17R89 818 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 TCP11X2Q5H9J9 407 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 EMC10Q5UCC4 262 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 BTBD8Q5XKL5 378 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 HEATR6Q6AI08 1181 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 SMYD5Q6GMV2 418 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 SYT13Q7L8C5 426 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 WDR5BQ86VZ2 330 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 SIX6OS1Q8N1H7 587 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 NAT16Q8N8M0 369 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 CLEC4CQ8WTT0 213 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 IRGQQ8WZA9 623 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 EDEM1Q92611 657 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 ARHGEF4Q9NR80 690 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 CYTH4Q9UIA0 394 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 DNAJC12Q9UKB3 198 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 AGO1Q9UL18 857 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 HCN2Q9UL51 889 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 NFE2L3Q9Y4A8 694 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 PATJQ8NI35 1801 aa10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 ZNF638Q14966 1978 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-206ENST00000553437 CCDC163A0A0D9SF12 145 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 CACNG3O60359 315 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 LETM1O95202 739 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 APODP05090 189 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 FYNP06241 537 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 HMBSP08397 361 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 PRKCSHP14314 528 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 TYRP14679 529 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 CORO1AP31146 461 aaKnown RBP10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 TNFRSF4P43489 277 aa10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 KIR2DL1P43626 348 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 PXNP49023 591 aaPredicted RBP10.75□□□□□ -0.69
CCDC88C-206ENST00000553437 SEC13P55735 322 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms