RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 PTPRQQ9UMZ3 2332 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 PYCARD-AS1I3L0S3 204 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 CBX4O00257 560 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 SLC26A4O43511 780 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 LDHAP00338 332 aaKnown RBP13.68□□□□□ -0.22
VPS29-211ENST00000553128 CST3P01034 146 aaPredicted RBP13.68□□□□□ -0.22
VPS29-211ENST00000553128 ZDHHC11BP0C7U3 371 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 GARTP22102 1010 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 SLC5A3P53794 718 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 PAQR9Q6ZVX9 377 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 HTR3DQ70Z44 454 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 FAM124AQ86V42 546 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 TMPRSS6Q8IU80 811 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 KRI1Q8N9T8 703 aaKnown RBP13.68□□□□□ -0.22
VPS29-211ENST00000553128 OVCA2Q8WZ82 227 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 SNX19Q92543 992 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 KLF16Q9BXK1 252 aaPredicted RBP13.68□□□□□ -0.22
VPS29-211ENST00000553128 SNX25Q9H3E2 840 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 C6orf106Q9H6K1 298 aaPredicted RBP13.68□□□□□ -0.22
VPS29-211ENST00000553128 IL37Q9NZH6 218 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 MARK1Q9P0L2 795 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 KNL1Q8NG31 2342 aa13.68□□□□□ -0.22
VPS29-211ENST00000553128 TMEM131Q92545 1883 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 H0Y8X5 98 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 J3QKU1 62 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 RTN3O95197 1032 aaPredicted RBP13.67□□□□□ -0.22
VPS29-211ENST00000553128 GCNT3O95395 438 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 TUBP50607 506 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 COPAP53621 1224 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 USP49Q70CQ1 688 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 CBWD2Q8IUF1 395 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 B3GALNT2Q8NCR0 500 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 RASSF8Q8NHQ8 419 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 DNAJC19Q96DA6 116 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 SIPA1Q96FS4 1042 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 KIF2CQ99661 725 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 WDR35Q9P2L0 1181 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 EXOC7Q9UPT5 735 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 ANKRD6Q9Y2G4 727 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 HECTD1Q9ULT8 2610 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 MYO18BQ8IUG5 2567 aa13.67□□□□□ -0.22
VPS29-211ENST00000553128 CABIN1Q9Y6J0 2220 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 E9PAM4 449 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 TLR5O60602 858 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 TACC1O75410 805 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 IGLV3-19P01714 112 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 TNNC2P02585 160 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 GRK6P43250 576 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 AFF3P51826 1226 aaKnown RBP13.66□□□□□ -0.22
VPS29-211ENST00000553128 CFHR1Q03591 330 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 ENPP2Q13822 863 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 STARD3Q14849 445 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 SUZ12Q15022 739 aaKnown RBP13.66□□□□□ -0.22
VPS29-211ENST00000553128 SF3A1Q15459 793 aaKnown RBP13.66□□□□□ -0.22
VPS29-211ENST00000553128 GEN1Q17RS7 908 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 LRRC69Q6ZNQ3 347 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 TRAPPC11Q7Z392 1133 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 FAM35AQ86V20 835 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 TMPRSS12Q86WS5 348 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 GPD1LQ8N335 351 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 LSM14AQ8ND56 463 aaKnown RBP13.66□□□□□ -0.22
VPS29-211ENST00000553128 NXPE2Q96DL1 559 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 NACA2Q9H009 215 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 TM9SF3Q9HD45 589 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 OSER1Q9NX31 292 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 THAP10Q9P2Z0 257 aaPredicted RBP13.66□□□□□ -0.22
VPS29-211ENST00000553128 DNMT3LQ9UJW3 386 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 FBXO10Q9UK96 956 aa13.66□□□□□ -0.22
VPS29-211ENST00000553128 R3HCC1Q9Y3T6 440 aaKnown RBP13.66□□□□□ -0.22
VPS29-211ENST00000553128 FAM92AA1XBS5 289 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 A8MXQ7 604 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 MDM4O15151 490 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 BEST1O76090 585 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 PRPF6O94906 941 aaKnown RBP13.65□□□□□ -0.22
VPS29-211ENST00000553128 ACO1P21399 889 aaKnown RBP13.65□□□□□ -0.22
VPS29-211ENST00000553128 PRKCHP24723 683 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 OXTRP30559 389 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 ACSL1P33121 698 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 DNAJC3Q13217 504 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 DUOXA2Q1HG44 320 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 PRAMEF14Q5SWL7 426 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 SYCP3Q8IZU3 236 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 ZMIZ2Q8NF64 920 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 SORCS1Q8WY21 1168 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 PRCCQ92733 491 aaPredicted RBP13.65□□□□□ -0.22
VPS29-211ENST00000553128 ELMO3Q96BJ8 720 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 EPSTI1Q96J88 318 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 NUP58Q9BVL2 599 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 NUDT5Q9UKK9 219 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 AK5Q9Y6K8 562 aa13.65□□□□□ -0.22
VPS29-211ENST00000553128 NUMA1Q14980 2115 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 PCDHGA12O60330 932 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 JUPP14923 745 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 CCT8P50990 548 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 MFAP3P55082 362 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 CDH8P55286 799 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 TARDBPQ13148 414 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS29-211ENST00000553128 WDR72Q3MJ13 1102 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 C6orf118Q5T5N4 469 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 Q6ZNB5 142 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms