RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CNPY1Q3B7I2 92 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SNX30Q5VWJ9 437 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 CGB2Q6NT52 195 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ALKBH5Q6P6C2 394 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 VSTM1Q6UX27 236 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 NT5DC3Q86UY8 548 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 CCNJLQ8IV13 435 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 VPS52Q8N1B4 723 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 HASPINQ8TF76 798 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SCG3Q8WXD2 468 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 RSPH1Q8WYR4 309 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 NCSTNQ92542 709 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 B3GALT6Q96L58 329 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 MAGEB18Q96M61 343 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ACAP3Q96P50 834 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PPP1R10Q96QC0 940 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 CARD9Q9H257 536 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 DENND2DQ9H6A0 471 aaPredicted RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 AMFRQ9UKV5 643 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ZNF232Q9UNY5 417 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 LZTS1Q9Y250 596 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 FRMD4BQ9Y2L6 1034 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 BZW2Q9Y6E2 419 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 A0A0A6YYK5 440 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 H3BQ06 376 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 FSCN2O14926 492 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 MAPK13O15264 365 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 EXOC3O60645 756 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 ATP6V1G1O75348 118 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 RARGP13631 454 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 PSMC2P35998 433 aaKnown RBP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 ACOT2P49753 483 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 TUSC3Q13454 348 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 CLUL1Q15846 466 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 TIGD5Q53EQ6 642 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 XKR4Q5GH76 650 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 ARHGEF18Q6ZSZ5 1173 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 FRMD5Q7Z6J6 570 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 DDX53Q86TM3 631 aaKnown RBP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 TRIM42Q8IWZ5 723 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 PPFIBP2Q8ND30 876 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 GATA6Q92908 595 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 HLA-CQ95604 372 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 C18orf25Q96B23 403 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 SNX27Q96L92 541 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 LRRC37BQ96QE4 947 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 CBWD1Q9BRT8 395 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 TMEM175Q9BSA9 504 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 GPR62Q9BZJ7 368 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 ENTPD7Q9NQZ7 604 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 DMAC2Q9NW81 257 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 ARMCX3Q9UH62 379 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 NAGPAQ9UK23 515 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 NR2E1Q9Y466 385 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIMA1-216ENST00000552909 COMMD3-BMI1R4GMX3 469 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 ATP8B3O60423 1300 aa7.99□□□□□ -1.13
LIMA1-216ENST00000552909 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 DCTN3O75935 186 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CXCL14O95715 111 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 EFEMP2O95967 443 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 H2AFZP0C0S5 128 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 FAM200BP0CF97 657 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 KCNA5P22460 613 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 KCNQ1P51787 676 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CLCNKBP51801 687 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 YARSP54577 528 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 MARSP56192 900 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 NFIL3Q16649 462 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 GSTA3Q16772 222 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 LONRF1Q17RB8 773 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CTC1Q2NKJ3 1217 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SH2D4BQ5SQS7 431 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 UBAP2Q5T6F2 1119 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CEP128Q6ZU80 1094 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 H2AFVQ71UI9 128 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ZNF571Q7Z3V5 609 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 TRIM59Q8IWR1 403 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 FAM186BQ8IYM0 893 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 MRPL43Q8N983 215 aaKnown RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 C3orf58Q8NDZ4 430 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 VN1R2Q8NFZ6 395 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 LZICQ8WZA0 190 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SERPINB12Q96P63 405 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CENPKQ9BS16 269 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 MSTO1Q9BUK6 570 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CCDC28BQ9BUN5 200 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SPATA16Q9BXB7 569 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 PITPNM3Q9BZ71 974 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 ZBP1Q9H171 429 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 TLE6Q9H808 572 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 UBE2ZQ9H832 354 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 TOPORSQ9NS56 1045 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIMA1-216ENST00000552909 CLDND1Q9NY35 253 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 NKIRAS1Q9NYS0 192 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 GRHL1Q9NZI5 618 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 THEGQ9P2T0 379 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 STYXL1Q9Y6J8 313 aa7.98□□□□□ -1.13
LIMA1-216ENST00000552909 USH1CQ9Y6N9 552 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms