RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PDGFRBP09619 1106 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 MAOBP27338 520 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 NTSR1P30989 418 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 PPP3CCP48454 512 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 CACNA2D1P54289 1103 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 IFRD2Q12894 506 aaPredicted RBP11.16□□□□□ -0.62
VPS29-208ENST00000550267 GRIK2Q13002 908 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 BTBD8Q5XKL5 378 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 EGFLAMQ63HQ2 1017 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 DPH6Q7L8W6 267 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 DYMQ7RTS9 669 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 DDX42Q86XP3 938 aaKnown RBP eCLIP11.16□□□□□ -0.62
VPS29-208ENST00000550267 TERB1Q8NA31 727 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 RASSF8Q8NHQ8 419 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 RNF217Q8TC41 542 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 IPO4Q8TEX9 1081 aaKnown RBP11.16□□□□□ -0.62
VPS29-208ENST00000550267 NOC3LQ8WTT2 800 aaKnown RBP11.16□□□□□ -0.62
VPS29-208ENST00000550267 HVCN1Q96D96 273 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 PCED1BQ96HM7 432 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 ZSCAN31Q96LW9 406 aaPredicted RBP11.16□□□□□ -0.62
VPS29-208ENST00000550267 AK8Q96MA6 479 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 CEP295NLQ96MC4 621 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 ACOX2Q99424 681 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 SLC6A17Q9H1V8 727 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 PDE11AQ9HCR9 933 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 CD248Q9HCU0 757 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 EHD2Q9NZN4 543 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 TBC1D14Q9P2M4 693 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 DEC1Q9P2X7 70 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 PCOLCE2Q9UKZ9 415 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 E2F8A0AVK6 867 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 HOXC11O43248 304 aaPredicted RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 CBFA2T3O75081 653 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 NDUFS2O75306 463 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 ZNF217O75362 1048 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 TMEM191BP0C7N4 346 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 WARSP23381 471 aaKnown RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 DDIT3P35638 169 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 NOP14P78316 857 aaKnown RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 GRIN1Q05586 938 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 MAPRE1Q15691 268 aaKnown RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 MDH1BQ5I0G3 518 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 SYCP2LQ5T4T6 812 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 TDRD10Q5VZ19 366 aaKnown RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 LIMS2Q7Z4I7 341 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 GLRX5Q86SX6 157 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 TMEM25Q86YD3 366 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 MARCH9Q86YJ5 346 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 BBS7Q8IWZ6 715 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 ADAM32Q8TC27 787 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 LARP4BQ92615 738 aaKnown RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 CRELD1Q96HD1 420 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 ZNF419Q96HQ0 510 aaPredicted RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 HPDLQ96IR7 371 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 C8orf48Q96LL4 319 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 ACCSQ96QU6 501 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 STRA6Q9BX79 667 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 PCIF1Q9H4Z3 704 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 FAM124BQ9H5Z6 455 aaPredicted RBP11.15□□□□□ -0.62
VPS29-208ENST00000550267 IL21RQ9HBE5 538 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 TMEM30AQ9NV96 361 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 TBC1D7Q9P0N9 293 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 SUSD2Q9UGT4 822 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 EXOC7Q9UPT5 735 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 NME7Q9Y5B8 376 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 RAD54BQ9Y620 910 aa11.15□□□□□ -0.62
VPS29-208ENST00000550267 LOC400499M0QZD8 3231 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 PTPRJQ12913 1337 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 COCHO43405 550 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 LDHAP00338 332 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 GNSP15586 552 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 MYO1EQ12965 1108 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 ANO4Q32M45 955 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 PREPLQ4J6C6 727 aaPredicted RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 L1TD1Q5T7N2 865 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 KIAA1324Q6UXG2 1013 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 HS2ST1Q7LGA3 356 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 TMPRSS7Q7RTY8 843 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 CHPFQ8IZ52 775 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 OR5B17Q8NGF7 314 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 MYCBPAPQ8TBZ2 947 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 SETD7Q8WTS6 366 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 WBP2Q969T9 261 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 OTUB2Q96DC9 234 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 ANKRD36BP1Q96IX9 119 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 SLITRK1Q96PX8 696 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 MRPL45Q9BRJ2 306 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 CBWD1Q9BRT8 395 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 MRPL44Q9H9J2 332 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 SPHK2Q9NRA0 654 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 SH3BP1Q9Y3L3 701 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 STARD13Q9Y3M8 1113 aa11.14□□□□□ -0.63
VPS29-208ENST00000550267 R3HCC1Q9Y3T6 440 aaKnown RBP11.14□□□□□ -0.63
VPS29-208ENST00000550267 PLXNB3Q9ULL4 1909 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 CLDN5O00501 218 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 GCNT3O95395 438 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 PRB1P04280 392 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 IRF1P10914 325 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 GARTP22102 1010 aa11.13□□□□□ -0.63
VPS29-208ENST00000550267 YWHAQP27348 245 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms