RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 SEMA3BQ13214 749 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 CLEC20AQ6ZU45 233 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 PIP4P1Q86T03 277 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 MIB1Q86YT6 1006 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 GRAMD1CQ8IYS0 662 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 C12orf29Q8N999 325 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 DEFB124Q8NES8 71 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 PAGE5Q96GU1 130 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 GABRG3Q99928 467 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 BBS2Q9BXC9 721 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 TMEM121BQ9BXQ6 578 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-218ENST00000548945 ADAM33Q9BZ11 813 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 IMPG2Q9BZV3 1241 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 DNAI2Q9GZS0 605 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 CYP3A43Q9HB55 503 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 CAPN10Q9HC96 672 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 FAM49BQ9NUQ9 324 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 HMGXB4Q9UGU5 601 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 SERTAD1Q9UHV2 236 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 RCOR1Q9UKL0 485 aa13.56□□□□□ -0.24
PTCH1-218ENST00000548945 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-218ENST00000548945 IGHV1OR15-9A0A0B4J2B8 117 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 C1QTNF9BB2RNN3 333 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 HHLA1C9JL84 531 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 NEDD8-MDP1E9PL57 170 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 CALUO43852 315 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-218ENST00000548945 KIF20AO95235 890 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 TBX18O95935 607 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 HLA-DRAP01903 254 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 CFIP05156 583 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 C1QTNF9P0C862 333 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 PIK3CAP42336 1068 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 MAPK8P45983 427 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 PLA2G4AP47712 749 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 GFPT1Q06210 699 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-218ENST00000548945 ZNF33AQ06730 810 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 NFIL3Q16649 462 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 KMT5BQ4FZB7 885 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 C1orf220Q5T0J3 134 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 EGFLAMQ63HQ2 1017 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 Q6ZNB5 142 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 TADA2BQ86TJ2 420 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 CHPFQ8IZ52 775 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 IPO4Q8TEX9 1081 aaKnown RBP13.55□□□□□ -0.24
PTCH1-218ENST00000548945 CDK5RAP1Q96SZ6 601 aaKnown RBP13.55□□□□□ -0.24
PTCH1-218ENST00000548945 SCNM1Q9BWG6 230 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 NT5C1AQ9BXI3 368 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTCH1-218ENST00000548945 OSER1Q9NX31 292 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 DNMT3LQ9UJW3 386 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 TRAF3IP3Q9Y228 551 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 ZNF510Q9Y2H8 683 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 CKAP5Q14008 2032 aa13.55□□□□□ -0.24
PTCH1-218ENST00000548945 BAHCC1Q9P281 2608 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CABIN1Q9Y6J0 2220 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 A0A1W2PQD8 194 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 PRRT4C9JH25 899 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 NPC1O15118 1278 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 TRIM24O15164 1050 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CYP26A1O43174 497 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CISD3P0C7P0 127 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 NDUFV2P19404 249 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ACO1P21399 889 aaKnown RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ADORA2BP29275 332 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 DGKGP49619 791 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 VAMP7P51809 220 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 KIF11P52732 1056 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ZNF132P52740 706 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ATXN3P54252 364 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ORC1Q13415 861 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 HNRNPDQ14103 355 aaKnown RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 E2F5Q15329 346 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 FOXD4L6Q3SYB3 417 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 FOXD4L5Q5VV16 416 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CEP135Q66GS9 1140 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 SPOPLQ6IQ16 392 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 FOXD4L3Q6VB84 417 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 INTS8Q75QN2 995 aaKnown RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 GPRIN1Q7Z2K8 1008 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CCDC186Q7Z3E2 898 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 HDDC3Q8N4P3 179 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 FOXD4L4Q8WXT5 416 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-218ENST00000548945 GATA6Q92908 595 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ELMO3Q96BJ8 720 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CYFIP2Q96F07 1278 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 FAXDC2Q96IV6 333 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 CLIC5Q9NZA1 410 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 FBXO10Q9UK96 956 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 ZMIZ1Q9ULJ6 1067 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 SLC27A6Q9Y2P4 619 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 NEUROG3Q9Y4Z2 214 aa13.54□□□□□ -0.24
PTCH1-218ENST00000548945 A0A1W2PQH9 124 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 H0Y626 953 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 ARHGAP33O14559 1287 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 OPHN1O60890 802 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 CILPO75339 1184 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 TRIM16O95361 564 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 HSP90AA1P07900 732 aaKnown RBP13.53□□□□□ -0.24
PTCH1-218ENST00000548945 SYPP08247 313 aa13.53□□□□□ -0.24
PTCH1-218ENST00000548945 RARGP13631 454 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms