RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NDRG1Q92597 394 aaKnown RBP19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 KCTD15Q96SI1 283 aaPredicted RBP19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 KLF6Q99612 283 aaPredicted RBP19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 CENPFP49454 3210 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 DNAH12Q6ZR08 3092 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 ZWINTO95229 277 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 PNPLA4P41247 253 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 LILRA4P59901 499 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 YWHAGP61981 247 aaKnown RBP eCLIP19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 HHATQ5VTY9 493 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 RNF43Q68DV7 783 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 CAND1Q86VP6 1230 aaKnown RBP19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 ECHDC2Q86YB7 292 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 ADGRF2Q8IZF7 708 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 CCDC33Q8N5R6 958 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 CCDC63Q8NA47 563 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 THOC1Q96FV9 657 aaKnown RBP19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 PLCD4Q9BRC7 762 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 ETNK1Q9HBU6 452 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 CYLDQ9NQC7 956 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 KLHL14Q9P2G3 628 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 STARD13Q9Y3M8 1113 aa19.24■□□□□ 0.67
PRPF40B-208ENST00000548436 MYO18AQ92614 2054 aaKnown RBP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 XPOTO43592 962 aaKnown RBP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 ACADSBP45954 432 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 SV2CQ496J9 727 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 PRPF39Q86UA1 669 aaKnown RBP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 BANPQ8N9N5 519 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 ANKLE1Q8NAG6 615 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 SLC44A1Q8WWI5 657 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 HSFY1Q96LI6 401 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 KLC2Q9H0B6 622 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 C12orf65Q9H3J6 166 aaKnown RBP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 RXFP1Q9HBX9 757 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 HUS1O60921 280 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 C1QAP02745 245 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 APRTP07741 180 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 IGFBP6P24592 240 aaPredicted RBP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 ADRA1DP25100 572 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 MAGEA6P43360 314 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 CPT1AP50416 773 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 CRYBB1P53674 252 aaPredicted RBP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 NCALDP61601 193 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 BNIP1Q12981 228 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 IRF5Q13568 498 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 PYROXD2Q8N2H3 581 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 B3GALNT2Q8NCR0 500 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 TCP10LQ8TDR4 215 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 LRRC8CQ8TDW0 803 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 CFAP36Q96G28 342 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 CSPG4P5Q96PW8 444 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 PLAC1Q9HBJ0 212 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 GTF2IRD1Q9UHL9 959 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 MFHAS1Q9Y4C4 1052 aa19.23■□□□□ 0.67
PRPF40B-208ENST00000548436 HGSO14964 777 aaPredicted RBP19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 EDF1O60869 148 aaKnown RBP19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 METTL18O95568 372 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 GBP2P32456 591 aaPredicted RBP19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 PTK7Q13308 1070 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 SLC45A4Q5BKX6 768 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 PIGZQ86VD9 579 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 CDKL3Q8IVW4 592 aaPredicted RBP19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 ZNF75CPQ92670 426 aaPredicted RBP19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 TRPM7Q96QT4 1865 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 ECT2Q9H8V3 914 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 POPDC2Q9HBU9 364 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 SLC17A7Q9P2U7 560 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 TTLL3Q9Y4R7 772 aa19.22■□□□□ 0.67
PRPF40B-208ENST00000548436 C17orf102A2RUQ5 167 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 CLDN5O00501 218 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 PTGESO14684 152 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 XPO1O14980 1071 aaKnown RBP19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 AMPD1P23109 780 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 FAAP100Q0VG06 881 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 KCNT2Q6UVM3 1135 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 ZNF276Q8N554 614 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 GBP7Q8N8V2 638 aaPredicted RBP19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 SERAC1Q96JX3 654 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 TNIP3Q96KP6 325 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 TSPAN18Q96SJ8 248 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 FRMD8Q9BZ67 464 aaPredicted RBP19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 PNPLA8Q9NP80 782 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 USP3Q9Y6I4 520 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 IGF2BP3O00425 579 aaKnown RBP eCLIP19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 GCATO75600 419 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 SPAG6O75602 509 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 BEST1O76090 585 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 GOT1P17174 413 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 CYP2B6P20813 491 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 WARSP23381 471 aaKnown RBP19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 MATKP42679 507 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 ELF3P78545 371 aaPredicted RBP19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 ADIGQ0VDE8 80 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 NCBP2-AS2Q69YL0 99 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 STRADAQ7RTN6 431 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 FAM131BQ86XD5 332 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 PARP9Q8IXQ6 854 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 DEFB106AQ8N104 65 aa19.21■□□□□ 0.67
PRPF40B-208ENST00000548436 ZFP42Q96MM3 310 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms