RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TGFB1I1O43294 461 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 IRF1P10914 325 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 CAMK2BQ13554 666 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 ENPP2Q13822 863 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 FAM173BQ6P4H8 233 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 SCFD1Q8WVM8 642 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 TOE1Q96GM8 510 aaKnown RBP13.57□□□□□ -0.24
USP28-212ENST00000544750 XPO6Q96QU8 1125 aaKnown RBP13.57□□□□□ -0.24
USP28-212ENST00000544750 BBS2Q9BXC9 721 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 MKRN2Q9H000 416 aaKnown RBP13.57□□□□□ -0.24
USP28-212ENST00000544750 VRTNQ9H8Y1 702 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 DMAP1Q9NPF5 467 aaPredicted RBP13.57□□□□□ -0.24
USP28-212ENST00000544750 ITM2CQ9NQX7 267 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 WDR35Q9P2L0 1181 aa13.57□□□□□ -0.24
USP28-212ENST00000544750 STX6O43752 255 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 TLR5O60602 858 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 CILPO75339 1184 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 BEST1O76090 585 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 TBX18O95935 607 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 DLATP10515 647 aaKnown RBP13.56□□□□□ -0.24
USP28-212ENST00000544750 ACO1P21399 889 aaKnown RBP13.56□□□□□ -0.24
USP28-212ENST00000544750 DGKGP49619 791 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 MYL6P60660 151 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 TNNC1P63316 161 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 CYP24A1Q07973 514 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 PSMD6Q15008 389 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 SNRNP35Q16560 246 aaKnown RBP13.56□□□□□ -0.24
USP28-212ENST00000544750 FUT11Q495W5 492 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 Q6ZNB5 142 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 TPGS1Q6ZTW0 290 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 EPM2AIP1Q7L775 607 aaPredicted RBP13.56□□□□□ -0.24
USP28-212ENST00000544750 FUKQ8N0W3 1084 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 ZCCHC9Q8N567 271 aaKnown RBP13.56□□□□□ -0.24
USP28-212ENST00000544750 CADM4Q8NFZ8 388 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 HPS3Q969F9 1004 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 SMOQ99835 787 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 GPR174Q9BXC1 333 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 GAREM1Q9H706 876 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 CSNK1G1Q9HCP0 422 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 CYLDQ9NQC7 956 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 TM7SF3Q9NS93 570 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 OSER1Q9NX31 292 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 FNDC3AQ9Y2H6 1198 aaKnown RBP13.56□□□□□ -0.24
USP28-212ENST00000544750 PCDHGB2Q9Y5G2 931 aa13.56□□□□□ -0.24
USP28-212ENST00000544750 MUC22E2RYF6 1773 aaPredicted RBP13.55□□□□□ -0.24
USP28-212ENST00000544750 KALRNO60229 2985 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 PTPRQQ9UMZ3 2332 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 A0A087WV48 116 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 METTL12A8MUP2 240 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 IGLV3-19P01714 112 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 ATXN1LP0C7T5 689 aaKnown RBP13.55□□□□□ -0.24
USP28-212ENST00000544750 NCAM1P13591 858 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 TNNI1P19237 187 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 ATICP31939 592 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 CDH8P55286 799 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 KIAA1324Q6UXG2 1013 aaKnown RBP13.55□□□□□ -0.24
USP28-212ENST00000544750 CCDC73Q6ZRK6 1079 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 SCUBE3Q8IX30 993 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 RDH13Q8NBN7 331 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 ZNF507Q8TCN5 953 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 COL26A1Q96A83 441 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 SMARCD1Q96GM5 515 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 LRIG1Q96JA1 1093 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 SMYD3Q9H7B4 428 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 PRDM16Q9HAZ2 1276 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 NXF1Q9UBU9 619 aaKnown RBP13.55□□□□□ -0.24
USP28-212ENST00000544750 SLC27A6Q9Y2P4 619 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 STON1Q9Y6Q2 735 aa13.55□□□□□ -0.24
USP28-212ENST00000544750 MORC2Q9Y6X9 1032 aaPredicted RBP13.55□□□□□ -0.24
USP28-212ENST00000544750 MEI4A8MW99 385 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 EIF3DO15371 548 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP28-212ENST00000544750 BCAT2O15382 392 aaPredicted RBP13.54□□□□□ -0.24
USP28-212ENST00000544750 AP1G2O75843 785 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 CER1O95813 267 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 C7P10643 843 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 TXLNAP40222 546 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 MATKP42679 507 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 IL12RB1P42701 662 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 TPMTP51580 245 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 ZNF132P52740 706 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 HLA-BQ31612 363 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 DCAF12L1Q5VU92 463 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 MARCH9Q86YJ5 346 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 CCDC65Q8IXS2 484 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 RBBP8NLQ8NC74 664 aaPredicted RBP13.54□□□□□ -0.24
USP28-212ENST00000544750 ADAM32Q8TC27 787 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 SETD7Q8WTS6 366 aaKnown RBP13.54□□□□□ -0.24
USP28-212ENST00000544750 CRELD1Q96HD1 420 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 PANK2Q9BZ23 570 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 SDCBP2Q9H190 292 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 AGPAT3Q9NRZ7 376 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 KRT82Q9NSB4 513 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 THAP10Q9P2Z0 257 aaPredicted RBP13.54□□□□□ -0.24
USP28-212ENST00000544750 COL5A1P20908 1838 aaPredicted RBP13.54□□□□□ -0.24
USP28-212ENST00000544750 ATP8B3O60423 1300 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 PLXNA2O75051 1894 aa13.54□□□□□ -0.24
USP28-212ENST00000544750 TRABD2BA6NFA1 517 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 HHLA1C9JL84 531 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 FLRT2O43155 660 aa13.53□□□□□ -0.24
USP28-212ENST00000544750 ZIC2O95409 532 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms