RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 DESP17661 470 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 NDUFV1P49821 464 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 TKTL1P51854 596 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CACNA2D1P54289 1103 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 MRPS5P82675 430 aaKnown RBP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 SF3A3Q12874 501 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS33A-209ENST00000544349 TAZQ16635 292 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 MFSD5Q6N075 450 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CRIPAKQ8N1N5 446 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 KCTD6Q8NC69 237 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CENPTQ96BT3 561 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 CHMP6Q96FZ7 201 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 TMEM209Q96SK2 561 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 KCNK16Q96T55 309 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 NRDE2Q9H7Z3 1164 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 TMEM30AQ9NV96 361 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 NINJ2Q9NZG7 142 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 LRFN2Q9ULH4 789 aa14.92□□□□□ -0.02
VPS33A-209ENST00000544349 FSBPO95073 299 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 CD48P09326 243 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 ITIH2P19823 946 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 GATMP50440 423 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 YWHAHQ04917 246 aaPredicted RBP14.91□□□□□ -0.02
VPS33A-209ENST00000544349 KYNUQ16719 465 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 CTU1Q7Z7A3 348 aaKnown RBP14.91□□□□□ -0.02
VPS33A-209ENST00000544349 LRRTM3Q86VH5 581 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 EXOC3L1Q86VI1 746 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 SIX6OS1Q8N1H7 587 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 ATL2Q8NHH9 583 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 NDRG1Q92597 394 aaKnown RBP14.91□□□□□ -0.02
VPS33A-209ENST00000544349 CENPIQ92674 756 aaPredicted RBP14.91□□□□□ -0.02
VPS33A-209ENST00000544349 CSNK1G1Q9HCP0 422 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 TMLHEQ9NVH6 421 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.91□□□□□ -0.02
VPS33A-209ENST00000544349 GGA2Q9UJY4 613 aa14.91□□□□□ -0.02
VPS33A-209ENST00000544349 PRG3Q9Y2Y8 225 aaPredicted RBP14.91□□□□□ -0.02
VPS33A-209ENST00000544349 ENDOD1O94919 500 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 TFE3P19532 575 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 CYP2C18P33260 490 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 ADCY8P40145 1251 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 RABGGTBP53611 331 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 HDAC4P56524 1084 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 BOLA3Q53S33 107 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 RAB41Q5JT25 222 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 SCYL2Q6P3W7 929 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 FBXO46Q6PJ61 603 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 SYDE1Q6ZW31 735 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 DIS3LQ8TF46 1054 aaKnown RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 GRK7Q8WTQ7 553 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 PRMT1Q99873 361 aaKnown RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 RHOBTB2Q9BYZ6 727 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 ADAM33Q9BZ11 813 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 ANAPC5Q9UJX4 755 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 HHLA1C9JL84 531 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 HOXA2O43364 376 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 TADA2AO75478 443 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 DAB1O75553 588 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 FBXO21O94952 628 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 KLRC2P26717 231 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 MATKP42679 507 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 IFNAR2P48551 515 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 ARSEP51690 589 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 YWHAZP63104 245 aaKnown RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 TSPY1Q01534 308 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 MAPRE1Q15691 268 aaKnown RBP14.9□□□□□ -0.02
VPS33A-209ENST00000544349 IZUMO3Q5VZ72 239 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 LRRC34Q8IZ02 419 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 CACNA2D3Q8IZS8 1091 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 DEFB106AQ8N104 65 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 FAM149B1Q96BN6 582 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 NLRC5Q86WI3 1866 aa14.9□□□□□ -0.02
VPS33A-209ENST00000544349 PTPRDP23468 1912 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 NRP1O14786 923 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 OAZ2O95190 189 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 TTC4O95801 387 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 BDNFP23560 247 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 DRICH1Q6PGQ1 229 aaPredicted RBP14.89□□□□□ -0.03
VPS33A-209ENST00000544349 GPRIN1Q7Z2K8 1008 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 DEFB128Q7Z7B8 93 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 CPLX4Q7Z7G2 160 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 NPAS4Q8IUM7 802 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 TEKT4Q8WW24 435 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 TBCBQ99426 244 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 ULBP1Q9BZM6 244 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 CNGB3Q9NQW8 809 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.89□□□□□ -0.03
VPS33A-209ENST00000544349 INTS9Q9NV88 658 aaKnown RBP14.89□□□□□ -0.03
VPS33A-209ENST00000544349 TBX21Q9UL17 535 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 DNPEPQ9ULA0 475 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 LIASO43766 372 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 CST8O60676 142 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 NOS2P35228 1153 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 CDH6P55285 790 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 DAOAP59103 153 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 LRRC14Q15048 493 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 VSTM1Q6UX27 236 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 BBS12Q6ZW61 710 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 STRADAQ7RTN6 431 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 CNPY4Q8N129 248 aa14.89□□□□□ -0.03
VPS33A-209ENST00000544349 ARMC5Q96C12 935 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms