RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 BHMT2Q9H2M3 363 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 TUFT1Q9NNX1 390 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 ITM2CQ9NQX7 267 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 DNAJC17Q9NVM6 304 aaKnown RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 TRPM5Q9NZQ8 1165 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 GTF3C4Q9UKN8 822 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 DSEQ9UL01 958 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 HCN2Q9UL51 889 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 ARHGAP26Q9UNA1 814 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 SLCO1B1Q9Y6L6 691 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 PTPRQQ9UMZ3 2332 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 COL6A6A6NMZ7 2263 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 DOPEY2Q9Y3R5 2298 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 MYH10P35580 1976 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 MYH11P35749 1972 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 USP9XQ93008 2570 aaPredicted RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TTC26A0AVF1 554 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 LAD1O00515 517 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 ABLIM1O14639 778 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TERTO14746 1132 aaKnown RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 NEMFO60524 1076 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 HIP1RO75146 1068 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TOM1L1O75674 476 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 NOL4O94818 638 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 FSBPO95073 299 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CYP11A1P05108 521 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 XBP1P17861 261 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 PROZP22891 400 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CCT6AP40227 531 aaKnown RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TAF6P49848 677 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 PDE6CP51160 858 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TPMTP51580 245 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 C21orf59P57076 290 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TAGLNQ01995 201 aaKnown RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 DHX9Q08211 1270 aaKnown RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 NR5A1Q13285 461 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 NFE2Q16621 373 aaPredicted RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CCDC142Q17RM4 750 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 ZSCAN23Q3MJ62 389 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 FUT11Q495W5 492 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 KCNT1Q5JUK3 1230 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TBCELQ5QJ74 424 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 SPATA1Q5VX52 437 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 GRAMD4Q6IC98 578 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 C16orf46Q6P387 395 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 FBXL19Q6PCT2 694 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CPLX2Q6PUV4 134 aaKnown RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CCDC81Q6ZN84 652 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TPGS1Q6ZTW0 290 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TMEM25Q86YD3 366 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TMPRSS6Q8IU80 811 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 EXD3Q8N9H8 876 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TERB1Q8NA31 727 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CADM4Q8NFZ8 388 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 ERMNQ8TAM6 284 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 PRCCQ92733 491 aaPredicted RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 BHMTQ93088 406 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 IGSF8Q969P0 613 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 SIPA1Q96FS4 1042 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TRMT2BQ96GJ1 504 aaKnown RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 NUP58Q9BVL2 599 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 HAPLN2Q9GZV7 340 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 C6orf106Q9H6K1 298 aaPredicted RBP5.09□□□□□ -1.59
LIMS1-214ENST00000542845 PLEKHA5Q9HAU0 1116 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 LRRC4CQ9HCJ2 640 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TM9SF3Q9HD45 589 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TMPRSS4Q9NRS4 437 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 RAB6BQ9NRW1 208 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 TBC1D14Q9P2M4 693 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 CLCA2Q9UQC9 943 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 SH3BP1Q9Y3L3 701 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 PCDHB1Q9Y5F3 818 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 PCDHGA1Q9Y5H4 931 aa5.09□□□□□ -1.59
LIMS1-214ENST00000542845 ATMQ13315 3056 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 BLACEA4D250 179 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 FAM47DPA6NHR8 397 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 KPNA7A9QM74 516 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 TMEM229AB2RXF0 380 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 PRRT4C9JH25 899 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 NEDD8-MDP1E9PL57 170 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 E9PMD0 336 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 PIRO00625 290 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 WNT7AO00755 349 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 HCRTO43612 131 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 PCDHGA12O60330 932 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 SYNCRIPO60506 623 aaKnown RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 HUS1O60921 280 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 USP12O75317 370 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MT-CO3P00414 261 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 AFPP02771 609 aaKnown RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 C1SP09871 688 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 CDK4P11802 303 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 CR2P20023 1033 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 RPS6KB1P23443 525 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 ANXA13P27216 316 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 OXTRP30559 389 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MCM7P33993 719 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 CCR10P46092 362 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 ACADVLP49748 655 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 GABREP78334 506 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms