RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 GFRA2O00451 464 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 BEST1O76090 585 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 TBX18O95935 607 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 RPN1P04843 607 aaKnown RBP16.28■□□□□ 0.2
RTN3-211ENST00000542238 FAM200BP0CF97 657 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 GNSP15586 552 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 CASP1P29466 404 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 NDST1P52848 882 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 SLC14A1Q13336 389 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 PLEKHG6Q3KR16 790 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 WDR45BQ5MNZ6 344 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 SLC41A1Q8IVJ1 513 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 TAF4BQ92750 862 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 ERLEC1Q96DZ1 483 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 ZNF419Q96HQ0 510 aaPredicted RBP16.28■□□□□ 0.2
RTN3-211ENST00000542238 CYLDQ9NQC7 956 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 FAM49BQ9NUQ9 324 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 DNAAF2Q9NVR5 837 aaKnown RBP16.28■□□□□ 0.2
RTN3-211ENST00000542238 FAM13BQ9NYF5 915 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 SCML2Q9UQR0 700 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 PCDHB9Q9Y5E1 797 aa16.28■□□□□ 0.2
RTN3-211ENST00000542238 DSPP15924 2871 aaKnown RBP16.28■□□□□ 0.2
RTN3-211ENST00000542238 PRRT4C9JH25 899 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 GREM1O60565 184 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 VNN1O95497 513 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 CD59P13987 128 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 ADORA2BP29275 332 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 AFMP43652 599 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 PLA2G4AP47712 749 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 PGFP49763 221 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 ORC1Q13415 861 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 KIAA1324Q6UXG2 1013 aaKnown RBP16.27■□□□□ 0.2
RTN3-211ENST00000542238 TOGARAM2Q6ZUX3 1019 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 TADA2BQ86TJ2 420 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 CHCHD4Q8N4Q1 142 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 OR2I1PQ8NGU4 316 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 ELMO3Q96BJ8 720 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 CACNA2D2Q9NY47 1150 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 DNMT3LQ9UJW3 386 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 RAD54BQ9Y620 910 aa16.27■□□□□ 0.2
RTN3-211ENST00000542238 SPEGQ15772 3267 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 FAM221BA6H8Z2 402 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 ACO1P21399 889 aaKnown RBP16.26■□□□□ 0.19
RTN3-211ENST00000542238 FAM193AP78312 1265 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 CUL4BQ13620 913 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 COL9A2Q14055 689 aaPredicted RBP16.26■□□□□ 0.19
RTN3-211ENST00000542238 STARD3Q14849 445 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 TRIP6Q15654 476 aaKnown RBP16.26■□□□□ 0.19
RTN3-211ENST00000542238 ZACNQ401N2 412 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 KLHDC10Q6PID8 442 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 SLC9A9Q8IVB4 645 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 CEP57L1Q8IYX8 460 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 C12orf29Q8N999 325 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 JAKMIP2Q96AA8 810 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 MRGPRX1Q96LB2 322 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 DNAI2Q9GZS0 605 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 CD248Q9HCU0 757 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 HMGXB4Q9UGU5 601 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 LHX6Q9UPM6 363 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 PCDHA5Q9Y5H7 936 aa16.26■□□□□ 0.19
RTN3-211ENST00000542238 CYP26A1O43174 497 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 CISD3P0C7P0 127 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 RARGP13631 454 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 CD6P30203 668 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 PSEN1P49768 467 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 DLG4P78352 724 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 C10orf120Q5SQS8 335 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 LRSAM1Q6UWE0 723 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 CLEC20AQ6ZU45 233 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 RAB44Q7Z6P3 723 aaPredicted RBP16.25■□□□□ 0.19
RTN3-211ENST00000542238 SPRYD3Q8NCJ5 442 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 TMC2Q8TDI7 906 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 BHMTQ93088 406 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 HNRNPABQ99729 332 aaKnown RBP16.25■□□□□ 0.19
RTN3-211ENST00000542238 ZDHHC5Q9C0B5 715 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 SLC6A17Q9H1V8 727 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 PNPLA8Q9NP80 782 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 DMAC2Q9NW81 257 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 OSER1Q9NX31 292 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 PLK2Q9NYY3 685 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 ZNF510Q9Y2H8 683 aa16.25■□□□□ 0.19
RTN3-211ENST00000542238 A0A1W2PQH9 124 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 MEI4A8MW99 385 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 WASH3PC4AMC7 463 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 K7ELQ4 463 aaPredicted RBP16.24■□□□□ 0.19
RTN3-211ENST00000542238 IKBKBO14920 756 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 NPC1O15118 1278 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 SH3BP5O60239 455 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 ASS1P00966 412 aaKnown RBP16.24■□□□□ 0.19
RTN3-211ENST00000542238 PIK3CAP42336 1068 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 ME1P48163 572 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 ZNF132P52740 706 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 RING1Q06587 406 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 E2F5Q15329 346 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 SV2AQ7L0J3 742 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 GPRIN1Q7Z2K8 1008 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 METTL3Q86U44 580 aaKnown RBP16.24■□□□□ 0.19
RTN3-211ENST00000542238 TMEM174Q8WUU8 243 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 UCMAQ8WVF2 138 aa16.24■□□□□ 0.19
RTN3-211ENST00000542238 CYFIP2Q96F07 1278 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms