RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CNPP09543 421 aaKnown RBP18.47■□□□□ 0.55
CLIP1-215ENST00000541108 CSH1P0DML2 217 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 CSH2P0DML3 217 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 GBP1P32455 592 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 EIF4EBP2Q13542 120 aaPredicted RBP18.47■□□□□ 0.55
CLIP1-215ENST00000541108 DPYSL2Q16555 572 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 CYP1B1Q16678 543 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 SPPL3Q8TCT6 385 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 OVCA2Q8WZ82 227 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 HSPH1Q92598 858 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 FBXO32Q969P5 355 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 NTAN1Q96AB6 310 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 TLR8Q9NR97 1041 aaKnown RBP18.47■□□□□ 0.55
CLIP1-215ENST00000541108 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLIP1-215ENST00000541108 KLHL11Q9NVR0 708 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLIP1-215ENST00000541108 PCDHA11Q9Y5I1 949 aa18.47■□□□□ 0.55
CLIP1-215ENST00000541108 V9GYY5 206 aaPredicted RBP18.47■□□□□ 0.55
CLIP1-215ENST00000541108 hCG_1818297A0A087WSY0 165 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 A0A1W2PQH9 124 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 PI4K2BG5E9Z4 385 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 C1RP00736 705 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 ADH1AP07327 375 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 TUBBP07437 444 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 CDH6P55285 790 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 PITX1P78337 314 aaPredicted RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 TAF10Q12962 218 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 SIX1Q15475 284 aaPredicted RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 SND1Q7KZF4 910 aaKnown RBP eCLIP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 ZDHHC14Q8IZN3 488 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 ZNF276Q8N554 614 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 MRPL43Q8N983 215 aaKnown RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 GPR152Q8TDT2 470 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 RNF139Q8WU17 664 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 MYRFLQ96LU7 910 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 TCF25Q9BQ70 676 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 SNRNP25Q9BV90 132 aaKnown RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 EMILIN2Q9BXX0 1053 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 UBE2OQ9C0C9 1292 aaKnown RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 SMOC2Q9H3U7 446 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 SLITRK6Q9H5Y7 841 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 NMUR1Q9HB89 426 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 WDR6Q9NNW5 1121 aaKnown RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 ALG13Q9NP73 1137 aaKnown RBP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 PIGVQ9NUD9 493 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 DDIT4Q9NX09 232 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.46■□□□□ 0.55
CLIP1-215ENST00000541108 NR2E1Q9Y466 385 aa18.46■□□□□ 0.55
CLIP1-215ENST00000541108 PRRG1O14668 218 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ZDHHC11BP0C7U3 371 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 CXCR3P49682 368 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ATXN1P54253 815 aaKnown RBP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ERVFC1P60507 584 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 NME3Q13232 169 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 NAA30Q147X3 362 aaPredicted RBP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ARL13BQ3SXY8 428 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ANKS1BQ7Z6G8 1248 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 FAM131BQ86XD5 332 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 PRELID2Q8N945 189 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 C12orf50Q8NA57 414 aaPredicted RBP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 PDZD8Q8NEN9 1154 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 DQX1Q8TE96 717 aaKnown RBP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 GIPC2Q8TF65 315 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 POF1BQ8WVV4 589 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ACSF2Q96CM8 615 aaPredicted RBP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 RUNDC3BQ96NL0 473 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 C17orf80Q9BSJ5 609 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 LRRC19Q9H756 370 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 FAM204AQ9H8W3 233 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 TLR9Q9NR96 1032 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 OLA1Q9NTK5 396 aaKnown RBP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLIP1-215ENST00000541108 FBXW11Q9UKB1 542 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 FZD10Q9ULW2 581 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 MYO16Q9Y6X6 1858 aa18.45■□□□□ 0.54
CLIP1-215ENST00000541108 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 TCRBV7S2A1N4TA0A589 114 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 TARSL2A2RTX5 802 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 DYNC1I1O14576 645 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 PHF2O75151 1096 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 CHRNA3P32297 505 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 SCAPQ12770 1279 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 PLD1Q13393 1074 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 VEPH1Q14D04 833 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 ELF2Q15723 593 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 SNX30Q5VWJ9 437 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 C8orf74Q6P047 294 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 MSANTD2Q6P1R3 559 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 LILRA6Q6PI73 481 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 ADAT2Q7Z6V5 191 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 CCDC26Q8TAB7 109 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 TRMT2BQ96GJ1 504 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 KLHL5Q96PQ7 755 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 TGS1Q96RS0 853 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 KRT12Q99456 494 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 GDF15Q99988 308 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 ZNF670Q9BS34 389 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 HEMGNQ9BXL5 484 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 WDCPQ9H6R7 721 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 ENTPD7Q9NQZ7 604 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms