RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 SPATA6Q9NWH7 488 aaPredicted RBP13.74□□□□□ -0.21
LTBR-208ENST00000541005 LSM7Q9UK45 103 aaKnown RBP13.74□□□□□ -0.21
LTBR-208ENST00000541005 SIK3Q9Y2K2 1263 aa13.74□□□□□ -0.21
LTBR-208ENST00000541005 F8VZ95 297 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 SCAMP3O14828 347 aaKnown RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 SART1O43290 800 aaKnown RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 STC2O76061 302 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 PAPSS2O95340 614 aaPredicted RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 IRF1P10914 325 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 ADH5P11766 374 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 CLCN1P35523 988 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 USP8P40818 1118 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 OPRD1P41143 372 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 NBL1P41271 181 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 CCR3P51677 355 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 BPIFB4P59827 614 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 GAS6Q14393 721 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 DRAP1Q14919 205 aaPredicted RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 BSPRYQ5W0U4 402 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 BTBD8Q5XKL5 378 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 RHBDF2Q6PJF5 856 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 RSRC2Q7L4I2 434 aaKnown RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 TMEM110Q86TL2 294 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 DHX40Q8IX18 779 aaKnown RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 SPEM1Q8N4L4 309 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 NDRG1Q92597 394 aaKnown RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 NELL1Q92832 810 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 CD101Q93033 1021 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 STK33Q9BYT3 514 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 LHX5Q9H2C1 402 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 ABCC13Q9NSE7 274 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 RBM12Q9NTZ6 932 aaKnown RBP13.73□□□□□ -0.21
LTBR-208ENST00000541005 MARK1Q9P0L2 795 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 MARCH2Q9P0N8 246 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 CYTH4Q9UIA0 394 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 NUDT5Q9UKK9 219 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 STRIP2Q9ULQ0 834 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 ZNF510Q9Y2H8 683 aa13.73□□□□□ -0.21
LTBR-208ENST00000541005 PLXND1Q9Y4D7 1925 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 PROB1E7EW31 1015 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 LAMTOR5O43504 91 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 SP9P0CG40 484 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 PNMA6AP0CW24 399 aaPredicted RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 TDGF1P13385 188 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 LCP1P13796 627 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 GALK1P51570 392 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 EFEMP1Q12805 493 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 PDCLQ13371 301 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 RAPGEF1Q13905 1077 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 FBXO43Q4G163 708 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 LY6G5CQ5SRR4 150 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 NAIF1Q69YI7 327 aaPredicted RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 Q6ZS52 159 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 BEND5Q7L4P6 421 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 SLC47A2Q86VL8 602 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 MIB1Q86YT6 1006 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 ETFBKMTQ8IXQ9 262 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 ATOH1Q92858 354 aaPredicted RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 PLD4Q96BZ4 506 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 ERGIC2Q96RQ1 377 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 DCLK3Q9C098 648 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 FBRSL1Q9HCM7 1045 aaKnown RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 RASAL2Q9UJF2 1139 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 HBS1LQ9Y450 684 aaKnown RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 EP300Q09472 2414 aaPredicted RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 GVINP1Q7Z2Y8 2422 aa13.72□□□□□ -0.21
LTBR-208ENST00000541005 PTPRZ1P23471 2315 aaPredicted RBP13.72□□□□□ -0.21
LTBR-208ENST00000541005 CKAP5Q14008 2032 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 GPR179Q6PRD1 2367 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 SMTNL1A8MU46 457 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.71□□□□□ -0.21
LTBR-208ENST00000541005 CHURC1-FNTBB4DL54 471 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 EGFP01133 1207 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 LTFP02788 710 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 KLKB1P03952 638 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 CDH5P33151 784 aaPredicted RBP13.71□□□□□ -0.21
LTBR-208ENST00000541005 ZNF165P49910 485 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 JAM2P57087 298 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 GAD2Q05329 585 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 TRIP4Q15650 581 aaPredicted RBP13.71□□□□□ -0.21
LTBR-208ENST00000541005 FAM217AQ8IXS0 508 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 PHTF2Q8N3S3 785 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 WDTC1Q8N5D0 677 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 CLEC4CQ8WTT0 213 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 RNF139Q8WU17 664 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 EZH1Q92800 747 aaPredicted RBP13.71□□□□□ -0.21
LTBR-208ENST00000541005 TRIM62Q9BVG3 475 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 FAM126AQ9BYI3 521 aaPredicted RBP13.71□□□□□ -0.21
LTBR-208ENST00000541005 SPHK2Q9NRA0 654 aa13.71□□□□□ -0.21
LTBR-208ENST00000541005 RALGAPA1Q6GYQ0 2036 aa13.71□□□□□ -0.22
LTBR-208ENST00000541005 ZFHX2Q9C0A1 2572 aaPredicted RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 A0A0A0MRY4 1105 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 SYCE3A1L190 88 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 E5RJQ4 531 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 PIK3R2O00459 728 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 EPHB6O15197 1021 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 PAPSS1O43252 624 aaPredicted RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 CACNG3O60359 315 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 LATS1O95835 1130 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 IGLV3-27P01718 113 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms