RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 HDDC3Q8N4P3 179 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 C12orf29Q8N999 325 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 IPO4Q8TEX9 1081 aaKnown RBP12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 ELMO3Q96BJ8 720 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 CYFIP2Q96F07 1278 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 SCNM1Q9BWG6 230 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 NT5C1AQ9BXI3 368 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 DNAI2Q9GZS0 605 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 FAM49BQ9NUQ9 324 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 OSER1Q9NX31 292 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 RCOR1Q9UKL0 485 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 ZMIZ1Q9ULJ6 1067 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 TRAF3IP3Q9Y228 551 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 FRMD4BQ9Y2L6 1034 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 NEUROG3Q9Y4Z2 214 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 PLXND1Q9Y4D7 1925 aa12.66□□□□□ -0.38
CBX3P4-202ENST00000540428 LAMA1P25391 3075 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 A0A1W2PQD8 194 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 PRRT4C9JH25 899 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 CYP26A1O43174 497 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 CALUO43852 315 aaPredicted RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 HLA-DRAP01903 254 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 RARGP13631 454 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 ACO1P21399 889 aaKnown RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 ADORA2BP29275 332 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 WASP42768 502 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 DGKGP49619 791 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 VAMP7P51809 220 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 KIF11P52732 1056 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 ZNF132P52740 706 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 ORC1Q13415 861 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 HNRNPDQ14103 355 aaKnown RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 NFIL3Q16649 462 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FOXD4L6Q3SYB3 417 aaPredicted RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 C1orf220Q5T0J3 134 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FOXD4L5Q5VV16 416 aaPredicted RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 CEP135Q66GS9 1140 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 SPOPLQ6IQ16 392 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FOXD4L3Q6VB84 417 aaPredicted RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 TPGS1Q6ZTW0 290 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 GPRIN1Q7Z2K8 1008 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 CCDC186Q7Z3E2 898 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FOXD4L4Q8WXT5 416 aaPredicted RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 GATA6Q92908 595 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FAXDC2Q96IV6 333 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 TWNKQ96RR1 684 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 CDK5RAP1Q96SZ6 601 aaKnown RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 ACOX2Q99424 681 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FAM124BQ9H5Z6 455 aaPredicted RBP12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 DNMT3LQ9UJW3 386 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 FBXO10Q9UK96 956 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 ZNF510Q9Y2H8 683 aa12.65□□□□□ -0.38
CBX3P4-202ENST00000540428 A0A1W2PQH9 124 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 H0Y626 953 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 ARHGAP33O14559 1287 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 NPC1O15118 1278 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 OPHN1O60890 802 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 TRIM16O95361 564 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 SYPP08247 313 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 CISD3P0C7P0 127 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 RALAP11233 206 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 SPINK2P20155 84 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 RDXP35241 583 aaKnown RBP12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 KIAA1211LQ6NV74 962 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 TOGARAM2Q6ZUX3 1019 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 INTS8Q75QN2 995 aaKnown RBP12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 METTL3Q86U44 580 aaKnown RBP12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 SLC41A1Q8IVJ1 513 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 FOXJ1Q92949 421 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 ZNF419Q96HQ0 510 aaPredicted RBP12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 HSPA12BQ96MM6 686 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 NIF3L1Q9GZT8 377 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 NMUR1Q9HB89 426 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 DNAAF2Q9NVR5 837 aaKnown RBP12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 CLIC5Q9NZA1 410 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 SUSD2Q9UGT4 822 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 CYP8B1Q9UNU6 501 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 SLC27A6Q9Y2P4 619 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 USP3Q9Y6I4 520 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 MYOFQ9NZM1 2061 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 CEP295Q9C0D2 2601 aa12.64□□□□□ -0.39
CBX3P4-202ENST00000540428 TNRC6BQ9UPQ9 1833 aaKnown RBP12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 CILPO75339 1184 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 STC2O76061 302 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 TOP3BO95985 862 aaKnown RBP12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 PENKP01210 267 aaPredicted RBP12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 HSP90AA1P07900 732 aaKnown RBP12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 CMA1P23946 247 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 CHKAP35790 457 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 SIM1P81133 766 aaPredicted RBP12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 COG7P83436 770 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 DNM1Q05193 864 aaKnown RBP12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 SLC14A1Q13336 389 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 STARD3Q14849 445 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 E2F5Q15329 346 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 C10orf120Q5SQS8 335 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 SYCP2LQ5T4T6 812 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 HSCBQ8IWL3 235 aa12.63□□□□□ -0.39
CBX3P4-202ENST00000540428 TTC39CQ8N584 583 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms