RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PDCD7Q8N8D1 485 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 UBL7Q96S82 380 aaPredicted RBP12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 PANK4Q9NVE7 773 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 GMIPQ9P107 970 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 FNDC3AQ9Y2H6 1198 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 ATP8B3O60423 1300 aa12.3□□□□□ -0.44
CLSTN3-209ENST00000539982 GOLGA8CPA6NN73 597 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 KCNJ18B7U540 433 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 TK2O00142 265 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 NPC1O15118 1278 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 TLR5O60602 858 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 STAU1O95793 577 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 TBX18O95935 607 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 TNNI1P19237 187 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 TPMTP51580 245 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 PAQR9Q6ZVX9 377 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 C1orf216Q8TAB5 229 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 MED10Q9BTT4 135 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 NUP58Q9BVL2 599 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 TRIM9Q9C026 710 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 MKRN2Q9H000 416 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 DMAP1Q9NPF5 467 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 HSPBP1Q9NZL4 362 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 LSM7Q9UK45 103 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 FBXO10Q9UK96 956 aa12.29□□□□□ -0.44
CLSTN3-209ENST00000539982 GOLGA4Q13439 2230 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 E9PAM4 449 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 TNFSF14O43557 240 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 IGLV3-19P01714 112 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 DLATP10515 647 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 ACO1P21399 889 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 ATICP31939 592 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 ATP5C1P36542 298 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 PGFP49763 221 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 GOLGA8FQ08AF8 430 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 GOLGA8DPQ0D2H9 430 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 ENPP2Q13822 863 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 SMAD1Q15797 465 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 STXBP4Q6ZWJ1 553 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 BRAPQ7Z569 592 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 FAM35AQ86V20 835 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 TMPRSS6Q8IU80 811 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 RDH13Q8NBN7 331 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 SIPA1Q96FS4 1042 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 SMARCD1Q96GM5 515 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 CRELD1Q96HD1 420 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 FBXO44Q9H4M3 255 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 TLR8Q9NR97 1041 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 THAP10Q9P2Z0 257 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 NXF1Q9UBU9 619 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 EIF2B4Q9UI10 523 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 SLC27A6Q9Y2P4 619 aa12.28□□□□□ -0.44
CLSTN3-209ENST00000539982 A0A1B0GVT2 93 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 FAM149AA5PLN7 773 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 SYNCRIPO60506 623 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 AP1G2O75843 785 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 TXLNAP40222 546 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 IL12RB1P42701 662 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 ABCG1P45844 678 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CSNK1EP49674 416 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CDH8P55286 799 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 MYL6P60660 151 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 TRPC3Q13507 836 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 PSMD6Q15008 389 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 SNRNP35Q16560 246 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 LARP1BQ659C4 914 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CCDC73Q6ZRK6 1079 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CCDC65Q8IXS2 484 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 ZMIZ2Q8NF64 920 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 SLC39A7Q92504 469 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 ZNF516Q92618 1163 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 PRCCQ92733 491 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 SYAP1Q96A49 352 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CCDC127Q96BQ5 260 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 TMX3Q96JJ7 454 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 TNIP3Q96KP6 325 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CGRRF1Q99675 332 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 XYLT2Q9H1B5 865 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 PCED1AQ9H1Q7 454 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 CYLDQ9NQC7 956 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 PLK2Q9NYY3 685 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 FBXO2Q9UK22 296 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 BTBD3Q9Y2F9 522 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 SRPRBQ9Y5M8 271 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 SHROOM3Q8TF72 1996 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 KALRNO60229 2985 aa12.27□□□□□ -0.45
CLSTN3-209ENST00000539982 BEST1O76090 585 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 PRB1P04280 392 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 ACADMP11310 421 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 HOXD13P35453 343 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 PLA2G4AP47712 749 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 AFF3P51826 1226 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 E2F5Q15329 346 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 PTPRNQ16849 979 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 KIF19Q2TAC6 998 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 FUKQ8N0W3 1084 aa12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 LSM14AQ8ND56 463 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-209ENST00000539982 ENGASEQ8NFI3 743 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms