RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 IKBKBO14920 756 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 ZBTB24O43167 697 aaPredicted RBP14.32□□□□□ -0.12
SS18-204ENST00000539244 CISD3P0C7P0 127 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 FAM200BP0CF97 657 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 WASP42768 502 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 AFMP43652 599 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 DLG4P78352 724 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 SIM1P81133 766 aaPredicted RBP14.32□□□□□ -0.12
SS18-204ENST00000539244 INCA1Q0VD86 236 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 STK4Q13043 487 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 HNRNPDQ14103 355 aaKnown RBP14.32□□□□□ -0.12
SS18-204ENST00000539244 SDE2Q6IQ49 451 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 KIAA1211LQ6NV74 962 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 Q6ZNB5 142 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 CLEC20AQ6ZU45 233 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 TOGARAM2Q6ZUX3 1019 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 GPRIN1Q7Z2K8 1008 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 MINDY1Q8N5J2 469 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 DEFB119Q8N690 84 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 C12orf29Q8N999 325 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 KIAA0895Q8NCT3 520 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 ZCCHC14Q8WYQ9 949 aaKnown RBP14.32□□□□□ -0.12
SS18-204ENST00000539244 ELMO3Q96BJ8 720 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 MRGPRX1Q96LB2 322 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 KCTD10Q9H3F6 313 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 FSCN3Q9NQT6 498 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.32□□□□□ -0.122e-7■■■■■ 220.9
SS18-204ENST00000539244 FOXD4L1Q9NU39 408 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 FAM49BQ9NUQ9 324 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.32□□□□□ -0.12
SS18-204ENST00000539244 FAM13BQ9NYF5 915 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 LSM7Q9UK45 103 aaKnown RBP14.32□□□□□ -0.12
SS18-204ENST00000539244 PCDHA5Q9Y5H7 936 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 DMXL2Q8TDJ6 3036 aa14.32□□□□□ -0.12
SS18-204ENST00000539244 SPAARA0A1B0GVQ0 90 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 SRRM3A6NNA2 597 aaPredicted RBP14.31□□□□□ -0.12
SS18-204ENST00000539244 PDXKO00764 312 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 CYP26A1O43174 497 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 GJB3O75712 270 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 SYPP08247 313 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 PDIA4P13667 645 aaKnown RBP14.31□□□□□ -0.12
SS18-204ENST00000539244 CD59P13987 128 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 PLA2G4AP47712 749 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 DGKGP49619 791 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 SLC14A1Q13336 389 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 ORC1Q13415 861 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 C1orf220Q5T0J3 134 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 TPGS1Q6ZTW0 290 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 SV2AQ7L0J3 742 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 METTL3Q86U44 580 aaKnown RBP14.31□□□□□ -0.12
SS18-204ENST00000539244 TRIML1Q8N9V2 468 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 HSPA12BQ96MM6 686 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 GTPBP2Q9BX10 602 aaKnown RBP14.31□□□□□ -0.12
SS18-204ENST00000539244 FAM124BQ9H5Z6 455 aaPredicted RBP14.31□□□□□ -0.12
SS18-204ENST00000539244 NMUR1Q9HB89 426 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 KLK13Q9UKR3 277 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 PCDHA7Q9UN72 937 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 CYP8B1Q9UNU6 501 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 NFE2L3Q9Y4A8 694 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 PKD1L2Q7Z442 2459 aa14.31□□□□□ -0.12
SS18-204ENST00000539244 MAPK13O15264 365 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 CLSTN1O94985 981 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 CENPBP07199 599 aaPredicted RBP14.3□□□□□ -0.12
SS18-204ENST00000539244 SLFN14P0C7P3 912 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 TRIM21P19474 475 aaKnown RBP14.3□□□□□ -0.12
SS18-204ENST00000539244 RDXP35241 583 aaKnown RBP14.3□□□□□ -0.12
SS18-204ENST00000539244 PSEN1P49768 467 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 KIF11P52732 1056 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 ZNF132P52740 706 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 FAM193AP78312 1265 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 ZNF423Q2M1K9 1284 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 ATL3Q6DD88 541 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 SPOPLQ6IQ16 392 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 FOXJ1Q92949 421 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 TWNKQ96RR1 684 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 CYP3A43Q9HB55 503 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 SUSD2Q9UGT4 822 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 DNMT3LQ9UJW3 386 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 SLC27A6Q9Y2P4 619 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 FREM2Q5SZK8 3169 aa14.3□□□□□ -0.12
SS18-204ENST00000539244 ZFYVE26Q68DK2 2539 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 A0A1W2PQH9 124 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 NPC1O15118 1278 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 ACTN4O43707 911 aaKnown RBP14.29□□□□□ -0.12
SS18-204ENST00000539244 STC2O76061 302 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 PENKP01210 267 aaPredicted RBP14.29□□□□□ -0.12
SS18-204ENST00000539244 HLA-DRAP01903 254 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 NR3C1P04150 777 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 RARGP13631 454 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 ACO1P21399 889 aaKnown RBP14.29□□□□□ -0.12
SS18-204ENST00000539244 ADORA2BP29275 332 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 ME1P48163 572 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 ENPP2Q13822 863 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 KMT5BQ4FZB7 885 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 SYCP2LQ5T4T6 812 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 CCDC186Q7Z3E2 898 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 RAB44Q7Z6P3 723 aaPredicted RBP14.29□□□□□ -0.12
SS18-204ENST00000539244 TADA2BQ86TJ2 420 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 GRAMD1CQ8IYS0 662 aa14.29□□□□□ -0.12
SS18-204ENST00000539244 CEP57L1Q8IYX8 460 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms