RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ZNF699Q32M78 642 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 BBS7Q8IWZ6 715 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 ETFBKMTQ8IXQ9 262 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 TERB1Q8NA31 727 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 ERLEC1Q96DZ1 483 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 SMARCD1Q96GM5 515 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 KCNK16Q96T55 309 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 GTPBP2Q9BX10 602 aaKnown RBP16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 CALCOCO1Q9P1Z2 691 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 DEC1Q9P2X7 70 aa16.64■□□□□ 0.25
CHMP4A-207ENST00000533523 TMEM8BA6NDV4 472 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 PDXKO00764 312 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 AP5Z1O43299 807 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 HYAL3O43820 417 aaPredicted RBP16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 CALUO43852 315 aaPredicted RBP16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 AP1G2O75843 785 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 STAU1O95793 577 aaKnown RBP16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 FAM163BP0C2L3 166 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 CASP4P49662 377 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 PREPLQ4J6C6 727 aaPredicted RBP16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 SOWAHCQ53LP3 525 aaPredicted RBP16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 SLC9A9Q8IVB4 645 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 HDDC3Q8N4P3 179 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 DEFB119Q8N690 84 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 TMEM174Q8WUU8 243 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 ZNF516Q92618 1163 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 XYLT2Q9H1B5 865 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 SPHK2Q9NRA0 654 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 RMND1Q9NWS8 449 aa16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 CHORDC1Q9UHD1 332 aaPredicted RBP16.63■□□□□ 0.25
CHMP4A-207ENST00000533523 SPAARA0A1B0GVQ0 90 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 BIN1O00499 593 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 GABRG2P18507 467 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 ATICP31939 592 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 HOXD12P35452 270 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 TUBP50607 506 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 CDH8P55286 799 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 ZNF445P59923 1031 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 SIM1P81133 766 aaPredicted RBP16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 GRAMD4Q6IC98 578 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 SLC23A3Q6PIS1 610 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 SASS6Q6UVJ0 657 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 SLC36A4Q6YBV0 504 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 NUDT18Q6ZVK8 323 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 SPATA20Q8TB22 786 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 WBP2Q969T9 261 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 ELMO3Q96BJ8 720 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 TNIP3Q96KP6 325 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 BBC3Q96PG8 261 aaPredicted RBP16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 KCTD10Q9H3F6 313 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 DNAJC17Q9NVM6 304 aaKnown RBP16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 PILRBQ9UKJ0 227 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 MAN1B1Q9UKM7 699 aa16.62■□□□□ 0.25
CHMP4A-207ENST00000533523 A0A0A0MRY4 1105 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 NEDD8-MDP1E9PL57 170 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 TRIM24O15164 1050 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 TLR5O60602 858 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 CCDC130P13994 396 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 AP3M2P53677 418 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 GFPT1Q06210 699 aaPredicted RBP16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 TYRO3Q06418 890 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 ORC1Q13415 861 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 DUOXA1Q1HG43 343 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 ZNF667Q5HYK9 610 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 SPDYCQ5MJ68 293 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 PEAR1Q5VY43 1037 aaPredicted RBP16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 EGFLAMQ63HQ2 1017 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 TMEM25Q86YD3 366 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 MIB1Q86YT6 1006 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 GUF1Q8N442 669 aaKnown RBP16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 CEP76Q8TAP6 659 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 COL26A1Q96A83 441 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 GSDMAQ96QA5 445 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 FUCA2Q9BTY2 467 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 GTPBP4Q9BZE4 634 aaKnown RBP16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 DMAC2Q9NW81 257 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 TRAF3IP3Q9Y228 551 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 GOLGA4Q13439 2230 aaKnown RBP16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 CABIN1Q9Y6J0 2220 aa16.61■□□□□ 0.25
CHMP4A-207ENST00000533523 ZBTB24O43167 697 aaPredicted RBP16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 NR3C1P04150 777 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 NDUFV2P19404 249 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 NTSR1P30989 418 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 NCOA4Q13772 614 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 NFIL3Q16649 462 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 PAQR9Q6ZVX9 377 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 RABEPKQ7Z6M1 372 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 ACOT1Q86TX2 421 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 CHPFQ8IZ52 775 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 PLEKHO2Q8TD55 490 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 JAKMIP2Q96AA8 810 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 SDCBP2Q9H190 292 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 FAM49BQ9NUQ9 324 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 HMGXB4Q9UGU5 601 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 SLC6A14Q9UN76 642 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 CYP8B1Q9UNU6 501 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 FRMD4BQ9Y2L6 1034 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 CKAP5Q14008 2032 aa16.6■□□□□ 0.25
CHMP4A-207ENST00000533523 IGHV1OR15-9A0A0B4J2B8 117 aa16.59■□□□□ 0.25
CHMP4A-207ENST00000533523 LRRIQ3A6PVS8 624 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms