RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TERB1Q8NA31 727 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 ZNF527Q8NB42 609 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 CIPCQ9C0C6 399 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 TFCP2L1Q9NZI6 479 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 SH3BP4Q9P0V3 963 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 C11orf21Q9P2W6 132 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 COX11Q9Y6N1 276 aa4.46□□□□□ -1.7
CD44-233ENST00000531141 SYT5O00445 386 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 ZSCAN9O15535 394 aaPredicted RBP4.45□□□□□ -1.7
CD44-233ENST00000531141 USP1O94782 785 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 PDE8BO95263 885 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 NPPBP16860 134 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 PTH2RP49190 550 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 RENBPP51606 427 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 HOXA4Q00056 320 aaPredicted RBP4.45□□□□□ -1.7
CD44-233ENST00000531141 AASDHQ4L235 1098 aaPredicted RBP4.45□□□□□ -1.7
CD44-233ENST00000531141 C4orf46Q504U0 113 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 PTF1AQ7RTS3 328 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 TTC30AQ86WT1 665 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 P3H2Q8IVL5 708 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 CLASRPQ8N2M8 674 aaKnown RBP4.45□□□□□ -1.7
CD44-233ENST00000531141 VPS37AQ8NEZ2 397 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 FAM71BQ8TC56 605 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 POF1BQ8WVV4 589 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 MACROD1Q9BQ69 325 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 CINPQ9BW66 212 aaPredicted RBP4.45□□□□□ -1.7
CD44-233ENST00000531141 RXFP3Q9NSD7 469 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 MGAT4CQ9UBM8 478 aa4.45□□□□□ -1.7
CD44-233ENST00000531141 ARHGEF17Q96PE2 2063 aaPredicted RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 LRRC3CA6NJW4 275 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 LINC01548A6NM66 108 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 DHHO43323 396 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 EXOC3O60645 756 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 PPFIA2O75334 1257 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 LDHAP00338 332 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 ITGA5P08648 1049 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 SRGAP2BP0DMP2 458 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 APEHP13798 732 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 DRD1P21728 446 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 YY1P25490 414 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 PBX1P40424 430 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 ALDH18A1P54886 795 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 PROK1P58294 105 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 CHAF1AQ13111 956 aaPredicted RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 FHL3Q13643 280 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 BLMHQ13867 455 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 PUM3Q15397 648 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 TRIM71Q2Q1W2 868 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 TMEM196Q5HYL7 178 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 BCDIN3DQ7Z5W3 292 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 HASPINQ8TF76 798 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 OVCA2Q8WZ82 227 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 PMM1Q92871 262 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 FYTTD1Q96QD9 318 aaKnown RBP4.44□□□□□ -1.7
CD44-233ENST00000531141 IGSF9Q9P2J2 1179 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 LPAR3Q9UBY5 353 aa4.44□□□□□ -1.7
CD44-233ENST00000531141 GXYLT2A0PJZ3 443 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 AQP12BA6NM10 295 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 BTBD19C9JJ37 291 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 UBE2Q2LH0YL09 131 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 J3KTA2 159 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 PIP5K1BO14986 540 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 SUV39H1O43463 412 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 ASNA1O43681 348 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 CHRM5P08912 532 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 ZNF37AP17032 561 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 PDIA3P30101 505 aaKnown RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 GSTM5P46439 218 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 DEUP1Q05D60 604 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 CCDC15Q0P6D6 951 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 SLC10A2Q12908 348 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 CSHL1Q14406 222 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 KCNJ12Q14500 433 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 SPARCL1Q14515 664 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 LARS2Q15031 903 aaKnown RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 ZACNQ401N2 412 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 CERKLQ49MI3 558 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 FAM90A2PQ658T7 463 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 GRHL2Q6ISB3 625 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 DNAJC10Q8IXB1 793 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 MAFAQ8NHW3 353 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 EDC3Q96F86 508 aaKnown RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 CRAMP1Q96RY5 1269 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 RMDN3Q96TC7 470 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 EIF3CQ99613 913 aaKnown RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 PRPF18Q99633 342 aaKnown RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 RNF26Q9BY78 433 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 TP63Q9H3D4 680 aaPredicted RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 GAR1Q9NY12 217 aaKnown RBP4.43□□□□□ -1.7
CD44-233ENST00000531141 ASIC5Q9NY37 505 aa4.43□□□□□ -1.7
CD44-233ENST00000531141 LGALS16A8MUM7 142 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 POC1B-GALNT4F8VUJ3 575 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 SMIM22K7EJ46 135 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 NPC1O15118 1278 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 GCATO75600 419 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 NTSR2O95665 410 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 MT-CO3P00414 261 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 TMIGD3P0DMS9 266 aaPredicted RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 MATN1P21941 496 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 MMP8P22894 467 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms