RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 C15orf59Q2T9L4 293 aaPredicted RBP22.11■■□□□ 1.13
VPS28-212ENST00000530836 VSIG1Q86XK7 387 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 KLHL7Q8IXQ5 586 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 NT5C3BQ969T7 300 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 RHOBTB2Q9BYZ6 727 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 ZWILCHQ9H900 591 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 TMEM51Q9NW97 253 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 MTRRQ9UBK8 725 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 VWA8A3KMH1 1905 aa22.11■■□□□ 1.13
VPS28-212ENST00000530836 CAPN9O14815 690 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 PHF2O75151 1096 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 LTFP02788 710 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 IL1R2P27930 398 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 CDO1Q16878 200 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 SPOCD1Q6ZMY3 1216 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 GPRIN1Q7Z2K8 1008 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 MAP7D3Q8IWC1 876 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 DEFB106AQ8N104 65 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 C12orf50Q8NA57 414 aaPredicted RBP22.1■■□□□ 1.13
VPS28-212ENST00000530836 RNF25Q96BH1 459 aaPredicted RBP22.1■■□□□ 1.13
VPS28-212ENST00000530836 CEP295NLQ96MC4 621 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 CLSTN3Q9BQT9 956 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 STIM2Q9P246 746 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 PCSK1NQ9UHG2 260 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 PTPRDP23468 1912 aa22.1■■□□□ 1.13
VPS28-212ENST00000530836 LRRD1A4D1F6 860 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 MDM4O15151 490 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 CLASP2O75122 1294 aaKnown RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 ENDOD1O94919 500 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 USP17L7P0C7H9 530 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 RALAP11233 206 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 H2AFXP16104 143 aaPredicted RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 RPL17P18621 184 aaKnown RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 KLF1Q13351 362 aaPredicted RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 DHX34Q14147 1143 aaKnown RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 PDK2Q15119 407 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 ATP13A4Q4VNC1 1196 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 DCAF6Q58WW2 860 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 SLC8B1Q6J4K2 584 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 KCTD6Q8NC69 237 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 FBXO44Q9H4M3 255 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 IGFLR1Q9H665 355 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 CCDC151A5D8V7 595 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 TNFRSF10BO14763 440 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 ERLIN1O75477 346 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 ADH1AP07327 375 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 RARAP10276 462 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 KDELR1P24390 212 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 KLRC2P26717 231 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 FNTAP49354 379 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 HDAC4P56524 1084 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 TXNRD3NBQ6F5E7 133 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 RSPO2Q6UXX9 243 aaPredicted RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 PSTKQ8IV42 348 aaKnown RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 SCN4BQ8IWT1 228 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 PRELID2Q8N945 189 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 MAFAQ8NHW3 353 aaPredicted RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 PPM1EQ8WY54 764 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 NPY6RQ99463 290 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 DDX47Q9H0S4 455 aaKnown RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 EPC1Q9H2F5 836 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 LRRC19Q9H756 370 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 COMMD8Q9NX08 183 aa22.09■■□□□ 1.13
VPS28-212ENST00000530836 FEZ2Q9UHY8 353 aaPredicted RBP22.09■■□□□ 1.13
VPS28-212ENST00000530836 YJEFN3A6XGL0 299 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 E7ENQ6 273 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 CDKN2BP42772 138 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 SULT1E1P49888 294 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 SLC5A3P53794 718 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 COL19A1Q14993 1142 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 SIX1Q15475 284 aaPredicted RBP22.08■■□□□ 1.13
VPS28-212ENST00000530836 TAZQ16635 292 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 SH3PXD2AQ5TCZ1 1133 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 SCYL2Q6P3W7 929 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 MFSD7Q6UXD7 560 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 BNIPLQ7Z465 357 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 ADAT2Q7Z6V5 191 aaKnown RBP22.08■■□□□ 1.13
VPS28-212ENST00000530836 EFHBQ8N7U6 833 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 RAPGEF5Q92565 580 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 MAGOHBQ96A72 148 aaKnown RBP22.08■■□□□ 1.13
VPS28-212ENST00000530836 PNKPQ96T60 521 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 PCYOX1Q9UHG3 505 aa22.08■■□□□ 1.13
VPS28-212ENST00000530836 hCG_1818297A0A087WSY0 165 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 MTMR11A4FU01 709 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 C3orf70A6NLC5 250 aaPredicted RBP22.07■■□□□ 1.12
VPS28-212ENST00000530836 ZNF487B1APH4 448 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 ADAM12O43184 909 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 F9P00740 461 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 RDXP35241 583 aaKnown RBP22.07■■□□□ 1.12
VPS28-212ENST00000530836 CDR1P51861 262 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 RPL10AP62906 217 aaKnown RBP22.07■■□□□ 1.12
VPS28-212ENST00000530836 SMTNL2Q2TAL5 461 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 KCNT1Q5JUK3 1230 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 IFT20Q8IY31 132 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 NUP93Q8N1F7 819 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 ARHGAP18Q8N392 663 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 PGAP3Q96FM1 320 aaPredicted RBP22.07■■□□□ 1.12
VPS28-212ENST00000530836 SPATA17Q96L03 361 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 HSFX1Q9UBD0 423 aa22.07■■□□□ 1.12
VPS28-212ENST00000530836 NR2E1Q9Y466 385 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms