RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PKNOX2Q96KN3 472 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 DHX35Q9H5Z1 703 aaKnown RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 FZD10Q9ULW2 581 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 STAP1Q9ULZ2 295 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 NAALADL1Q9UQQ1 740 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 BDNFP23560 247 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 MAPRE1Q15691 268 aaKnown RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 PPP6R3Q5H9R7 873 aaPredicted RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 RNASEH2BQ5TBB1 312 aaKnown RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 C1orf228Q6PIY5 440 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 FAM131BQ86XD5 332 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 PSTKQ8IV42 348 aaKnown RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 RSAD2Q8WXG1 361 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 ARMC5Q96C12 935 aa21.55■■□□□ 1.04
VPS28-209ENST00000528142 KCTD15Q96SI1 283 aaPredicted RBP21.55■■□□□ 1.04
VPS28-209ENST00000528142 ZBED1O96006 694 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 USP17L7P0C7H9 530 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 CYP2F1P24903 491 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 RPL22P35268 128 aaKnown RBP21.54■■□□□ 1.04
VPS28-209ENST00000528142 YWHAHQ04917 246 aaPredicted RBP21.54■■□□□ 1.04
VPS28-209ENST00000528142 IFFO1Q0D2I5 559 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 MORF4L2Q15014 288 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 EMC10Q5UCC4 262 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 FAM43BQ6ZT52 329 aaPredicted RBP21.54■■□□□ 1.04
VPS28-209ENST00000528142 TMEM109Q9BVC6 243 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 NRDE2Q9H7Z3 1164 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 DNAJB4Q9UDY4 337 aa21.54■■□□□ 1.04
VPS28-209ENST00000528142 M0QYT0 321 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 STIP1P31948 543 aaKnown RBP21.53■■□□□ 1.04
VPS28-209ENST00000528142 RDXP35241 583 aaKnown RBP21.53■■□□□ 1.04
VPS28-209ENST00000528142 BCAR1P56945 870 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 TSPY1Q01534 308 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 TCTN1Q2MV58 587 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 AGBL2Q5U5Z8 902 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 PM20D1Q6GTS8 502 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 SCML4Q8N228 414 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 FAM71DQ8N9W8 422 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 DMAP1Q9NPF5 467 aaPredicted RBP21.53■■□□□ 1.04
VPS28-209ENST00000528142 DNAJC17Q9NVM6 304 aaKnown RBP21.53■■□□□ 1.04
VPS28-209ENST00000528142 FARP1Q9Y4F1 1045 aaPredicted RBP21.53■■□□□ 1.04
VPS28-209ENST00000528142 USP3Q9Y6I4 520 aa21.53■■□□□ 1.04
VPS28-209ENST00000528142 OAZ2O95190 189 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 TTC4O95801 387 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 OR1G1P47890 313 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 CTCFP49711 727 aaPredicted RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 ROR1Q01973 937 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 RNASELQ05823 741 aaKnown RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 KRT71Q3SY84 523 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 ZC3H18Q86VM9 953 aaKnown RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 DIS3LQ8TF46 1054 aaKnown RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 IRGQQ8WZA9 623 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 SEPT8Q92599 483 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 CSPG4P5Q96PW8 444 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 PNPLA8Q9NP80 782 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 CWC15Q9P013 229 aaKnown RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 NDC80O14777 642 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 LTFP02788 710 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 DARS2Q6PI48 645 aaKnown RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 CRIPAKQ8N1N5 446 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 PYROXD2Q8N2H3 581 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 CASD1Q96PB1 797 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 FAM193BQ96PV7 902 aaPredicted RBP21.52■■□□□ 1.04
VPS28-209ENST00000528142 USP29Q9HBJ7 922 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 PIGVQ9NUD9 493 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 SHOC2Q9UQ13 582 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 PCDHB7Q9Y5E2 793 aa21.52■■□□□ 1.04
VPS28-209ENST00000528142 SKOR1P84550 965 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 DEUP1Q05D60 604 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 B4GALNT4Q76KP1 1039 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 PCGF5Q86SE9 256 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 PRCCQ92733 491 aaPredicted RBP21.51■■□□□ 1.03
VPS28-209ENST00000528142 APBB2Q92870 758 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 PGAP3Q96FM1 320 aaPredicted RBP21.51■■□□□ 1.03
VPS28-209ENST00000528142 SLC9A7Q96T83 725 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 CENPHQ9H3R5 247 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 NINJ2Q9NZG7 142 aa21.51■■□□□ 1.03
VPS28-209ENST00000528142 RCOR3Q9P2K3 495 aaPredicted RBP21.51■■□□□ 1.03
VPS28-209ENST00000528142 PRG3Q9Y2Y8 225 aaPredicted RBP21.51■■□□□ 1.03
VPS28-209ENST00000528142 CAPN9O14815 690 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 PQBP1O60828 265 aaKnown RBP21.5■■□□□ 1.03
VPS28-209ENST00000528142 ZFXP17010 805 aaPredicted RBP21.5■■□□□ 1.03
VPS28-209ENST00000528142 LMAN1P49257 510 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 KYNUQ16719 465 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 KDM7AQ6ZMT4 941 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 CEP128Q6ZU80 1094 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 HOOK3Q86VS8 718 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 UHMK1Q8TAS1 419 aaKnown RBP21.5■■□□□ 1.03
VPS28-209ENST00000528142 SLC7A14Q8TBB6 771 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 CPT1BQ92523 772 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 RTP4Q96DX8 246 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 RBM15Q96T37 977 aaKnown RBP eCLIP21.5■■□□□ 1.03
VPS28-209ENST00000528142 ZCWPW1Q9H0M4 648 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 WDR6Q9NNW5 1121 aaKnown RBP21.5■■□□□ 1.03
VPS28-209ENST00000528142 HEY1Q9Y5J3 304 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 BCLAF3A2AJT9 711 aaKnown RBP21.5■■□□□ 1.03
VPS28-209ENST00000528142 H7C0C1 242 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 ATP5OP48047 213 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 ATN1P54259 1190 aaPredicted RBP21.5■■□□□ 1.03
VPS28-209ENST00000528142 NME3Q13232 169 aa21.5■■□□□ 1.03
VPS28-209ENST00000528142 TMPRSS4Q9NRS4 437 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms