RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TJP2Q9UDY2 1190 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 DNMT3LQ9UJW3 386 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 KIAA1257Q9ULG3 409 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 SLC9A3R1O14745 358 aaPredicted RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 KAT7O95251 611 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 CCDC192P0DO97 292 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 ERCC5P28715 1186 aaPredicted RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 YWHAGP61981 247 aaKnown RBP eCLIP11.18□□□□□ -0.62
CD44-227ENST00000528086 EFEMP1Q12805 493 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 LPAL2Q16609 132 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 BSPRYQ5W0U4 402 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 C11orf57Q6ZUT1 292 aaPredicted RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 SCML4Q8N228 414 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 IL17RCQ8NAC3 791 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 SHC3Q92529 594 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 EDEM1Q92611 657 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 OTUB2Q96DC9 234 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 PIWIL1Q96J94 861 aaKnown RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 IPO9Q96P70 1041 aaKnown RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 HHIPQ96QV1 700 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 FAM126AQ9BYI3 521 aaPredicted RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 THAP9Q9H5L6 903 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 MARK1Q9P0L2 795 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 TBC1D14Q9P2M4 693 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 SFMBT1Q9UHJ3 866 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 FBXO10Q9UK96 956 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 SMG5Q9UPR3 1016 aaKnown RBP11.18□□□□□ -0.62
CD44-227ENST00000528086 SH3BP1Q9Y3L3 701 aa11.18□□□□□ -0.62
CD44-227ENST00000528086 GON4LQ3T8J9 2241 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 PLXND1Q9Y4D7 1925 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 GTPBP10A4D1E9 387 aaKnown RBP11.17□□□□□ -0.62
CD44-227ENST00000528086 PRRT4C9JH25 899 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 M0QYV0 167 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 SGK1O00141 431 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 MSI1O43347 362 aaKnown RBP11.17□□□□□ -0.62
CD44-227ENST00000528086 CACNG3O60359 315 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 SETSIPP0DME0 302 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 LCP1P13796 627 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 CLCN1P35523 988 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 PSEN1P49768 467 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 SEC13P55735 322 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 YWHAEP62258 255 aaKnown RBP11.17□□□□□ -0.62
CD44-227ENST00000528086 KDSRQ06136 332 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 NR1H3Q13133 447 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 DMC1Q14565 340 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 TRIP4Q15650 581 aaPredicted RBP11.17□□□□□ -0.62
CD44-227ENST00000528086 FBXO43Q4G163 708 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 C2orf27AQ580R0 203 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 FYB2Q5VWT5 728 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 TPGS1Q6ZTW0 290 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 SYT13Q7L8C5 426 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 WDR5BQ86VZ2 330 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 LONP2Q86WA8 852 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 FAM217AQ8IXS0 508 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 CCDC33Q8N5R6 958 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 ZNF606Q8WXB4 792 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 ATRIPQ8WXE1 791 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 MYEOVQ96EZ4 313 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 PNKPQ96T60 521 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 ACOX2Q99424 681 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 NAA15Q9BXJ9 866 aaKnown RBP11.17□□□□□ -0.62
CD44-227ENST00000528086 SLC4A5Q9BY07 1137 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 PLK2Q9NYY3 685 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 MARCH2Q9P0N8 246 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 RASAL2Q9UJF2 1139 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 AGO1Q9UL18 857 aaKnown RBP11.17□□□□□ -0.62
CD44-227ENST00000528086 NUP205Q92621 2012 aa11.17□□□□□ -0.62
CD44-227ENST00000528086 TNRC6BQ9UPQ9 1833 aaKnown RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 MUC22E2RYF6 1773 aaPredicted RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 SLC12A8A0AV02 714 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 FOXN3O00409 490 aaPredicted RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 DCLK1O15075 740 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 PAPSS1O43252 624 aaPredicted RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 ADH1CP00326 375 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 PENKP01210 267 aaPredicted RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 IGLV3-27P01718 113 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 HMBSP08397 361 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 TYRP14679 529 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 CORO1AP31146 461 aaKnown RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 EIF2DP41214 584 aaKnown RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 SGSHP51688 502 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 PITX1P78337 314 aaPredicted RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 AMPD2Q01433 879 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 GAD2Q05329 585 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 NCAPHQ15003 741 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 TAF5Q15542 800 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 MAN2A1Q16706 1144 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 ARHGAP44Q17R89 818 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 EXOC3L4Q17RC7 722 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 VWA3BQ502W6 1294 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 CDKAL1Q5VV42 579 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 MSANTD2Q6P1R3 559 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 ZC3H14Q6PJT7 736 aaKnown RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 GBP6Q6ZN66 633 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 APTXQ7Z2E3 356 aaKnown RBP11.16□□□□□ -0.62
CD44-227ENST00000528086 CREBRFQ8IUR6 639 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 FMNL3Q8IVF7 1028 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 ALLCQ8N6M5 410 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 ADAM33Q9BZ11 813 aa11.16□□□□□ -0.62
CD44-227ENST00000528086 NDST4Q9H3R1 872 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms