RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 FOXJ1Q92949 421 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 PCED1BQ96HM7 432 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 MRPL45Q9BRJ2 306 aaKnown RBP11.16□□□□□ -0.62
CPSF1-203ENST00000527916 TBC1D14Q9P2M4 693 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF462Q96JM2 2506 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 TENM4Q6N022 2769 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 A0A087WV48 116 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 IGHV1OR15-9A0A0B4J2B8 117 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 LRRIQ3A6PVS8 624 aaPredicted RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 TRIM66O15016 1216 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 HCRTO43612 131 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF202O95125 648 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 NR3C1P04150 777 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CHRM1P11229 460 aaPredicted RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 HOXB2P14652 356 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 PTPN1P18031 435 aaKnown RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 BDNFP23560 247 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 ANXA13P27216 316 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CASP4P49662 377 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 MCCD1P59942 119 aaPredicted RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 NOP14P78316 857 aaKnown RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 GAD2Q05329 585 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 MESP2Q0VG99 397 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 BECN1Q14457 450 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 SGSM1Q2NKQ1 1148 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 ZACNQ401N2 412 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 TDRD10Q5VZ19 366 aaKnown RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 RHBDF2Q6PJF5 856 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 DENND5BQ6ZUT9 1274 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 TMPRSS7Q7RTY8 843 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 SLCO6A1Q86UG4 719 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 SLC41A1Q8IVJ1 513 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 GUF1Q8N442 669 aaKnown RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 TAF4BQ92750 862 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 MYLPFQ96A32 169 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CCDC34Q96HJ3 373 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF419Q96HQ0 510 aaPredicted RBP11.15□□□□□ -0.62
CPSF1-203ENST00000527916 C8orf48Q96LL4 319 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CDC6Q99741 560 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 TTLL2Q9BWV7 592 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 ZDHHC4Q9NPG8 344 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CFAP97Q9P2B7 532 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 DEC1Q9P2X7 70 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 PCOLCE2Q9UKZ9 415 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CYP8B1Q9UNU6 501 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 FRMD4BQ9Y2L6 1034 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 CPQQ9Y646 472 aa11.15□□□□□ -0.62
CPSF1-203ENST00000527916 SPTA1P02549 2419 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 MYO18BQ8IUG5 2567 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 A8MXQ7 604 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 CBFA2T3O75081 653 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 VNN1O95497 513 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 ABL1P00519 1130 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 RPL13P26373 211 aaKnown RBP11.14□□□□□ -0.63
CPSF1-203ENST00000527916 NTSR1P30989 418 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 GRIK1P39086 918 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 PSMC1P62191 440 aaKnown RBP11.14□□□□□ -0.63
CPSF1-203ENST00000527916 NUCB2P80303 420 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 ZXDBP98169 803 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 CYP27A1Q02318 531 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 CYP4F3Q08477 520 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 GRIK2Q13002 908 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 NCOA4Q13772 614 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 CCDC142Q17RM4 750 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF667Q5HYK9 610 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 C12orf40Q86WS4 652 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 SLC39A7Q92504 469 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 OTUB2Q96DC9 234 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 ELOVL4Q9GZR5 314 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 SMPD4Q9NXE4 827 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 NXF1Q9UBU9 619 aaKnown RBP11.14□□□□□ -0.63
CPSF1-203ENST00000527916 NME7Q9Y5B8 376 aa11.14□□□□□ -0.63
CPSF1-203ENST00000527916 A0A1B0GTW7 788 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 E2F8A0AVK6 867 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF840PA6NDX5 716 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 TRABD2BA6NFA1 517 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 SCAMP3O14828 347 aaKnown RBP11.13□□□□□ -0.63
CPSF1-203ENST00000527916 CER1O95813 267 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF883P0CG24 379 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 P4HA1P13674 534 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 ABCG1P45844 678 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 VAMP7P51809 220 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 DLG4P78352 724 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 BIRC3Q13489 604 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 ZNF699Q32M78 642 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 MDH1BQ5I0G3 518 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 LY6G5CQ5SRR4 150 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 C10orf76Q5T2E6 689 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 IL27RAQ6UWB1 636 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 INTS8Q75QN2 995 aaKnown RBP11.13□□□□□ -0.63
CPSF1-203ENST00000527916 SV2AQ7L0J3 742 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 CHPFQ8IZ52 775 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 CRYBG2Q8N1P7 616 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 B3GALNT2Q8NCR0 500 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 TNIP3Q96KP6 325 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 SLITRK1Q96PX8 696 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 RNF38Q9H0F5 515 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 GOLPH3LQ9H4A5 285 aa11.13□□□□□ -0.63
CPSF1-203ENST00000527916 NFE2L3Q9Y4A8 694 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms