RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 REPS2Q8NFH8 660 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 RNF19AQ9NV58 838 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 SLC24A2Q9UI40 661 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 GSTA4O15217 222 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 DAB1O75553 588 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 TGFB3P10600 412 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 TRPC1P48995 793 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 SLC26A2P50443 739 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 GALK1P51570 392 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 MRPS15P82914 257 aaKnown RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF200P98182 395 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 C3orf62Q6ZUJ4 267 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 PPHLN1Q8NEY8 458 aaKnown RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF333Q96JL9 665 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 MRIQ9BWK5 157 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 SPATA16Q9BXB7 569 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 NDFIP2Q9NV92 336 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 DDIT4Q9NX09 232 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 PPATQ06203 517 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 KRT33BQ14525 404 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 CBWD6Q4V339 395 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 CBWD3Q5JTY5 395 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 CBWD5Q5RIA9 395 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 NIPA1Q7RTP0 329 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 ADGRF2Q8IZF7 708 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 TTC30BQ8N4P2 665 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 DENND2DQ9H6A0 471 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 DDX28Q9NUL7 540 aaKnown RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 PKD2L2Q9NZM6 624 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 WDR37Q9Y2I8 494 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 LRRC42Q9Y546 428 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 SNX5Q9Y5X3 404 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 RBAK-RBAKDNI3L0D1 243 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 GNGT2O14610 69 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 PSMD10O75832 226 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 VDRP11473 427 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 ODC1P11926 461 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 C21orf59P57076 290 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 C10orf120Q5SQS8 335 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 EMC10Q5UCC4 262 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 C11orf63Q6NUN7 778 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 CATSPERGQ6ZRH7 1159 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 BHMTQ93088 406 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 STX18Q9P2W9 335 aaKnown RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 TIMM13Q9Y5L4 95 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-213ENST00000514442 CASTOR2A6NHX0 329 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 ZC3H11AO75152 810 aaKnown RBP eCLIP13.55□□□□□ -0.24
TCOF1-213ENST00000514442 UBA1P22314 1058 aaKnown RBP13.55□□□□□ -0.24
TCOF1-213ENST00000514442 CCNJLQ8IV13 435 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 IPMKQ8NFU5 416 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 EGFL8Q99944 293 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 TMEM106CQ9BVX2 250 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 OLA1Q9NTK5 396 aaKnown RBP13.55□□□□□ -0.24
TCOF1-213ENST00000514442 GPR182O15218 404 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 SERPINB10P48595 397 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 ATN1P54259 1190 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-213ENST00000514442 NCKAP1LP55160 1127 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 TMCO5AQ8N6Q1 288 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 PBXIP1Q96AQ6 731 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 PCMTD2Q9NV79 361 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 PAK5Q9P286 719 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 RAG1P15918 1043 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 NFKBIAP25963 317 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 DYTNA2CJ06 578 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 SERPINB1P30740 379 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 DLG4P78352 724 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 C1orf186Q6ZWK4 172 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 PREBQ9HCU5 417 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 ATAD3AQ9NVI7 634 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 EURLQ9NYK6 297 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 ARHGAP26Q9UNA1 814 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 DMTF1Q9Y222 760 aa13.55□□□□□ -0.24
TCOF1-213ENST00000514442 RGPD8O14715 1765 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-213ENST00000514442 CLEC16AQ2KHT3 1053 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 MFSD5Q6N075 450 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 MUC3BQ9H195 1237 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 CNGB3Q9NQW8 809 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 UBAP1Q9NZ09 502 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 AIM2O14862 343 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PSTPIP1O43586 416 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 KLRC4O43908 158 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 CALCAP01258 141 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 RTP1P59025 263 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 FUT2Q10981 343 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PDK1Q15118 436 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 TTC39BQ5VTQ0 682 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 TTC33Q6PID6 262 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 FAM228AQ86W67 206 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 CHSY1Q86X52 802 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 FAM172AQ8WUF8 416 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 ART4Q93070 314 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 NKX1-2Q9UD57 310 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 LOC100653049A0A140TA62 436 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 GTPBP10A4D1E9 387 aaKnown RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 KRT34O76011 436 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 HADHAP40939 763 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PTPN11Q06124 597 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PLEKHA7Q6IQ23 1121 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 ANGPTL8Q6UXH0 198 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms