RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 EIF2B4Q9UI10 523 aaKnown RBP11.59□□□□□ -0.55
DDX41-216ENST00000513562 PCDHB13Q9Y5F0 798 aa11.59□□□□□ -0.55
DDX41-216ENST00000513562 PLK4O00444 970 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 KIAA0391O15091 583 aaKnown RBP11.58□□□□□ -0.56
DDX41-216ENST00000513562 NPC1O15118 1278 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 PCDHGA12O60330 932 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 TLR5O60602 858 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 ALCAMQ13740 583 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 TMPRSS12Q86WS5 348 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 WDR49Q8IV35 697 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 SYCP3Q8IZU3 236 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 ENGASEQ8NFI3 743 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 NOC3LQ8WTT2 800 aaKnown RBP11.58□□□□□ -0.56
DDX41-216ENST00000513562 SIPA1Q96FS4 1042 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 FCRL3Q96P31 734 aaPredicted RBP11.58□□□□□ -0.56
DDX41-216ENST00000513562 NUP58Q9BVL2 599 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 FGFBP2Q9BYJ0 223 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 NACA2Q9H009 215 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 PCED1AQ9H1Q7 454 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 PCIF1Q9H4Z3 704 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 COMMD8Q9NX08 183 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 TBC1D7Q9P0N9 293 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 FBXO10Q9UK96 956 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 SNX11Q9Y5W9 270 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 SLCO1B1Q9Y6L6 691 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 ZNF462Q96JM2 2506 aa11.58□□□□□ -0.56
DDX41-216ENST00000513562 TLX3O43711 291 aaPredicted RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 ACO1P21399 889 aaKnown RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 IL12RB1P42701 662 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 CSNK1EP49674 416 aaKnown RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 PGFP49763 221 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 CCT8P50990 548 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 COPAP53621 1224 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 SURF1Q15526 300 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 LRRC69Q6ZNQ3 347 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 TRAPPC11Q7Z392 1133 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 FAM35AQ86V20 835 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 TMPRSS6Q8IU80 811 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 CBWD2Q8IUF1 395 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 PRCCQ92733 491 aaPredicted RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 DNAJC19Q96DA6 116 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 P2RY11Q96G91 374 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 KLF16Q9BXK1 252 aaPredicted RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 OSGEPQ9NPF4 335 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 DMAP1Q9NPF5 467 aaPredicted RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.57□□□□□ -0.561e-21■■■■■ 521.7
DDX41-216ENST00000513562 THAP10Q9P2Z0 257 aaPredicted RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 STK17AQ9UEE5 414 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 LSM7Q9UK45 103 aaKnown RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 ANKRD6Q9Y2G4 727 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 SLC27A6Q9Y2P4 619 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 KIF3AQ9Y496 699 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 PTPRBP23467 1997 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 URB1O60287 2271 aaKnown RBP11.57□□□□□ -0.56
DDX41-216ENST00000513562 ATP8B3O60423 1300 aa11.57□□□□□ -0.56
DDX41-216ENST00000513562 TEX51A0A1B0GUA7 166 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 FRMD3A2A2Y4 597 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 ZNF233A6NK53 670 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 A8MXQ7 604 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 J3QKU1 62 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 CAPN9O14815 690 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 PAPSS1O43252 624 aaPredicted RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 SYNCRIPO60506 623 aaKnown RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 PRPF6O94906 941 aaKnown RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 TBX18O95935 607 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 BMP15O95972 392 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 CST3P01034 146 aaPredicted RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 GRIA4P48058 902 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 TNNC1P63316 161 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 GOLGA8FQ08AF8 430 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 GOLGA8DPQ0D2H9 430 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 SF3A1Q15459 793 aaKnown RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 TEAD4Q15561 434 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 WDR72Q3MJ13 1102 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 CCDC157Q569K6 752 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 C6orf118Q5T5N4 469 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 LARP1BQ659C4 914 aaKnown RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 PCSK4Q6UW60 755 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 Q6ZNB5 142 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 PAQR9Q6ZVX9 377 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 BHMTQ93088 406 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 IGSF8Q969P0 613 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 SMARCD1Q96GM5 515 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 CYLDQ9NQC7 956 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.56□□□□□ -0.56
DDX41-216ENST00000513562 PCDHGA1Q9Y5H4 931 aa11.56□□□□□ -0.56
DDX41-216ENST00000513562 RRP8O43159 456 aaKnown RBP11.55□□□□□ -0.56
DDX41-216ENST00000513562 STAU1O95793 577 aaKnown RBP11.55□□□□□ -0.56
DDX41-216ENST00000513562 PENKP01210 267 aaPredicted RBP11.55□□□□□ -0.56
DDX41-216ENST00000513562 ACADMP11310 421 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 MFAP3P55082 362 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 ORC1Q13415 861 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 GEN1Q17RS7 908 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 INAVAQ3KP66 663 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 CACUL1Q86Y37 369 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 SNIP1Q8TAD8 396 aaKnown RBP11.55□□□□□ -0.56
DDX41-216ENST00000513562 SNX19Q92543 992 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 EPSTI1Q96J88 318 aa11.55□□□□□ -0.56
DDX41-216ENST00000513562 C6orf106Q9H6K1 298 aaPredicted RBP11.55□□□□□ -0.56
DDX41-216ENST00000513562 TM9SF3Q9HD45 589 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms