RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 METTL7BQ6UX53 244 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 KYAT3Q6YP21 454 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 NET1Q7Z628 596 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TDRPQ86YL5 185 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 DDIASQ8IXT1 998 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 NKD2Q969F2 451 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 MRPL46Q9H2W6 279 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 EFCAB1Q9HAE3 211 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 COL20A1Q9P218 1284 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 CPSF3Q9UKF6 684 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 COQ4Q9Y3A0 265 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ANGPTL3Q9Y5C1 460 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 SLIT2O94813 1529 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 M0QYT0 321 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 XPO1O14980 1071 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ASS1P00966 412 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ATP5BP06576 529 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 DPEP1P16444 411 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 GLRBP48167 497 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 GLRA4Q5JXX5 417 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 FKBP1CQ5VVH2 108 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 SEL1L3Q68CR1 1132 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 IYDQ6PHW0 289 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 KCNT2Q6UVM3 1135 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 RIPOR1Q6ZS17 1223 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 TDRD5Q8NAT2 981 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 JOSD2Q8TAC2 188 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 MECRQ9BV79 373 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ING2Q9H160 280 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 GGA3Q9NZ52 723 aa8.68□□□□□ -1.02
LIMCH1-216ENST00000512820 ACKR2O00590 384 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 PSMD3O43242 534 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 TIMM44O43615 452 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CLPTM1O96005 669 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 RAG1P15918 1043 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 MGAT1P26572 445 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 EEF1DP29692 281 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CA8P35219 290 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 POU5F1Q01860 360 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 FNBP1LQ5T0N5 605 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 MFN1Q8IWA4 741 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 SCUBE3Q8IX30 993 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 PIWIL2Q8TC59 973 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CPT1BQ92523 772 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 SIKE1Q9BRV8 207 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 MAGEB5Q9BZ81 275 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 NRDE2Q9H7Z3 1164 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ARHGEF38Q9NXL2 777 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 UMODL1Q5DID0 1318 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 LRP6O75581 1613 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 C2orf71A6NGG8 1288 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 DCXO43602 365 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 AHCYL1O43865 530 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ANPEPP15144 967 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 AVPR1AP37288 418 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 GP5P40197 560 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CNTN2Q02246 1040 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 LY6KQ17RY6 165 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CES3Q6UWW8 571 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 EP400NLQ6ZTU2 488 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 DNERQ8NFT8 737 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 IPMKQ8NFU5 416 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 HTR3CQ8WXA8 447 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 APOL2Q9BQE5 337 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 PHACTR1Q9C0D0 580 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 FAM192AQ9GZU8 254 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CAAP1Q9H8G2 361 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 SPC25Q9HBM1 224 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 TCF7L2Q9NQB0 619 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 RGPD5Q99666 1765 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 A0A087WZ62 844 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 LACTBL1A8MY62 500 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ANGPT2O15123 496 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 PMM2O15305 246 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 MTSS1O43312 755 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CD4P01730 458 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 HNRNPCP07910 306 aaKnown RBP eCLIP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 AMPD1P23109 780 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 CDKN2BP42772 138 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 HSPA13P48723 471 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF143P52747 638 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 PDAP1Q13442 181 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 DGKZQ13574 1117 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ANKRD22Q5VYY1 191 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 NAPEPLDQ6IQ20 393 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 C16orf87Q6PH81 154 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ADGRD1Q6QNK2 874 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 RNF157Q96PX1 679 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 DDX50Q9BQ39 737 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 FDXACB1Q9BRP7 624 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 NMUR2Q9GZQ4 415 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 ELP3Q9H9T3 547 aa8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 IARS2Q9NSE4 1012 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 WARS2Q9UGM6 360 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 RUVBL2Q9Y230 463 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-216ENST00000512820 GOLGA8CPA6NN73 597 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SRP72O76094 671 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 LAMB3Q13751 1172 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 CAPSQ13938 189 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 INPP5AQ14642 412 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms