RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 FAM149B1Q96BN6 582 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 ZNF707Q96C28 371 aaPredicted RBP7.53□□□□□ -1.2
NUP54-204ENST00000506098 LRCH3Q96II8 777 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 NPY6RQ99463 290 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 NCAPGQ9BPX3 1015 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 CNPY3Q9BT09 278 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 IRX2Q9BZI1 471 aaPredicted RBP7.53□□□□□ -1.2
NUP54-204ENST00000506098 TRIM7Q9C029 511 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 NMUR1Q9HB89 426 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 ZNF334Q9HCZ1 680 aaPredicted RBP7.53□□□□□ -1.2
NUP54-204ENST00000506098 OLA1Q9NTK5 396 aaKnown RBP7.53□□□□□ -1.2
NUP54-204ENST00000506098 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.53□□□□□ -1.2
NUP54-204ENST00000506098 OSER1Q9NX31 292 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.53□□□□□ -1.2
NUP54-204ENST00000506098 GMIPQ9P107 970 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 ALG6Q9Y672 507 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 CAPN6Q9Y6Q1 641 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 SZT2Q5T011 3432 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 C5orf42Q9H799 3197 aa7.53□□□□□ -1.2
NUP54-204ENST00000506098 CCDC195A0A1B0GUA6 201 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 ZNF840PA6NDX5 716 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 CCL16O15467 120 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 KIF5CO60282 957 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 PALMO75781 387 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 GRAP2O75791 330 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 CSPG5O95196 566 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 RALAP11233 206 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 NCAM1P13591 858 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 CDC25CP30307 473 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 GTF2F1P35269 517 aaKnown RBP eCLIP7.52□□□□□ -1.21
NUP54-204ENST00000506098 PCK1P35558 622 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 RNASE9P60153 205 aaKnown RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 ETF1P62495 437 aaKnown RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 IFRD2Q12894 506 aaPredicted RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 NNTQ13423 1086 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 ADGRE1Q14246 886 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 MESDQ14696 234 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 TAF12Q16514 161 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 DCAF6Q58WW2 860 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 OTUD1Q5VV17 481 aaPredicted RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 GAREM2Q75VX8 874 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 NT5DC3Q86UY8 548 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 HS6ST3Q8IZP7 471 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 ARFGAP1Q8N6T3 406 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 CD101Q93033 1021 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 BTBD6Q96KE9 485 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 CFAP57Q96MR6 1250 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 CDK5RAP1Q96SZ6 601 aaKnown RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 GAS2L1Q99501 681 aaPredicted RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 ADAM33Q9BZ11 813 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 SFXN1Q9H9B4 322 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 PRDM16Q9HAZ2 1276 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 TRPM5Q9NZQ8 1165 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 DNMT3BQ9UBC3 853 aaKnown RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 STAP1Q9ULZ2 295 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 MAGED2Q9UNF1 606 aaPredicted RBP7.52□□□□□ -1.21
NUP54-204ENST00000506098 NAALADL1Q9UQQ1 740 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 CLUHO75153 1309 aa7.52□□□□□ -1.21
NUP54-204ENST00000506098 ATG2BQ96BY7 2078 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 TCF20Q9UGU0 1960 aaKnown RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 KIF2AO00139 706 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 ZNF197O14709 1029 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 CAPN9O14815 690 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 LINC01565O15544 149 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 MOSPD3O75425 235 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 LRCH4O75427 683 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 RNF8O76064 485 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 OLFM2O95897 454 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 TRUB2O95900 331 aaKnown RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 F9P00740 461 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 OAS1P00973 400 aaKnown RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 RHOP08100 348 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 SRGAP2BP0DMP2 458 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 RARGP13631 454 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 HOXB8P17481 243 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 DESP17661 470 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 TFE3P19532 575 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 COMTP21964 271 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 PSMA2P25787 234 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 CTNNA2P26232 953 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 GABRR2P28476 465 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 SDC4P31431 198 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 NAP1L1P55209 391 aaKnown RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 HDAC4P56524 1084 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 PITX1P78337 314 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 C15orf59Q2T9L4 293 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 PRSS36Q5K4E3 855 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 ZNF569Q5MCW4 686 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 HECTD3Q5T447 861 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 MEI1Q5TIA1 1274 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 LRRC38Q5VT99 294 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 ANKRD54Q6NXT1 300 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 CC2D1AQ6P1N0 951 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 SYCE2Q6PIF2 218 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 CYP4V2Q6ZWL3 525 aaPredicted RBP7.51□□□□□ -1.21
NUP54-204ENST00000506098 GPR149Q86SP6 731 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 DAAM2Q86T65 1068 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 TADA2BQ86TJ2 420 aa7.51□□□□□ -1.21
NUP54-204ENST00000506098 SLC35F6Q8N357 371 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms