RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CXorf49A8MYA2 514 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 HNRNPCL1O60812 293 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 IL1BP01584 269 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ARFIP2P53365 341 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC26A11Q86WA9 606 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CFAP36Q96G28 342 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CPB2Q96IY4 423 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NUDCD1Q96RS6 583 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TMEM120AQ9BXJ8 343 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ASB7Q9H672 318 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 POPDC2Q9HBU9 364 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BATF3Q9NR55 127 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TSPAN16Q9UKR8 245 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RPL26L1Q9UNX3 145 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 IKBKGQ9Y6K9 419 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KCNN4O15554 427 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PRPSAP2O60256 369 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 HAUS5O94927 633 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RBL1P28749 1068 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SERPINB3P29508 390 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SERPINB4P48594 390 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC26A2P50443 739 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CDK16Q00536 496 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FAXCQ5TGI0 409 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RFWD3Q6PCD5 774 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SH3TC2Q8TF17 1288 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KHSRPQ92945 711 aaKnown RBP eCLIP16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZFYVE28Q9HCC9 887 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FBXO6Q9NRD1 293 aaPredicted RBP16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SMYD2Q9NRG4 433 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 LRRC42Q9Y546 428 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 LAMA2P24043 3122 aaKnown RBP16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CASP8AP2Q9UKL3 1982 aa16.7■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 A0A087WZ62 844 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CFAP69A5D8W1 941 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TRIM49D1C9J1S8 452 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 E7ENQ6 273 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ENTPD5O75356 428 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MAGEA6P43360 314 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TNFAIP2Q03169 654 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CA9Q16790 459 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TTC39BQ5VTQ0 682 aaPredicted RBP16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PCDH19Q8TAB3 1148 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 FDXACB1Q9BRP7 624 aaPredicted RBP16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PCDH18Q9HCL0 1135 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MTO1Q9Y2Z2 717 aaKnown RBP16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TRIP11Q15643 1979 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DNAJC25-GNG10A0A024R161 153 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 C2orf71A6NGG8 1288 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 DPYSL4O14531 572 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PRKCHP24723 683 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RGS7P49802 495 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CCNHP51946 323 aaPredicted RBP16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KRT81Q14533 505 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PDK2Q15119 407 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SLC9A4Q6AI14 798 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 C17orf99Q6UX52 265 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 C4orf50Q6ZRC1 276 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PPM1NQ8N819 430 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 C12orf29Q8N999 325 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 LRRN4Q8WUT4 740 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NSL1Q96IY1 281 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ANKRD27Q96NW4 1050 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 SRPK1Q96SB4 655 aaKnown RBP16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PPP1R16BQ96T49 567 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BTBD10Q9BSF8 475 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PDGFCQ9NRA1 345 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ETNK2Q9NVF9 386 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ZNF180Q9UJW8 692 aa16.69■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 BCLAF3A2AJT9 711 aaKnown RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 KLF11O14901 512 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CA12O43570 354 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MAP3K6O95382 1288 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 NEFHP12036 1026 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 P4HA1P13674 534 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TGM2P21980 687 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CDC25CP30307 473 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 PHKA2P46019 1235 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 IGBP1P78318 339 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 POU5F1BQ06416 359 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TMEM132DQ14C87 1099 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RBBP5Q15291 538 aaKnown RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 OLFML1Q6UWY5 402 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 GPR142Q7Z601 462 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 IFNLR1Q8IU57 520 aaPredicted RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 LINC01465Q8N7H1 131 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 USP6NLQ92738 828 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 MMP19Q99542 508 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 HEY1Q9Y5J3 304 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 COPEO14579 308 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 APOL1O14791 398 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 GSC2O15499 205 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 UGT1A9O60656 530 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 CCDC22O60826 627 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 RFPL1O75677 317 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 GABBR2O75899 941 aa16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 TXNP10599 105 aaKnown RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ARF4P18085 180 aaPredicted RBP16.68■□□□□ 0.26
MSH5-SAPCD1-208ENST00000498473 ADORA2AP29274 412 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms