RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 TTC30AQ86WT1 665 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 MIB1Q86YT6 1006 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 SFTPA1Q8IWL2 248 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 PHTF2Q8N3S3 785 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 NELFBQ8WX92 580 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 CNOT6LQ96LI5 555 aaKnown RBP13.39□□□□□ -0.27
PTPRF-214ENST00000496043 BBS2Q9BXC9 721 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 DCLK3Q9C098 648 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 DUSP15Q9H1R2 295 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-214ENST00000496043 LRRC4Q9HBW1 653 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 MARK1Q9P0L2 795 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 CIZ1Q9ULV3 898 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-214ENST00000496043 INVSQ9Y283 1065 aa13.39□□□□□ -0.27
PTPRF-214ENST00000496043 NEDD8-MDP1E9PL57 170 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 SGK1O00141 431 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 BIN1O00499 593 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 XPO1O14980 1071 aaKnown RBP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 P4HA2O15460 535 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 STC2O76061 302 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 GNA14O95837 355 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 ZBED1O96006 694 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 TYRP14679 529 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 BMP6P22004 513 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 GBP1P32455 592 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 CHKAP35790 457 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 BCAT1P54687 386 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 YWHAGP61981 247 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 PDE4CQ08493 712 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 EFEMP1Q12805 493 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 BYSLQ13895 437 aaKnown RBP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 GOLGA7BQ2TAP0 167 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 C10orf76Q5T2E6 689 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 PM20D1Q6GTS8 502 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 SDE2Q6IQ49 451 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 TTI2Q6NXR4 508 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 Q6ZNB5 142 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 RSRC2Q7L4I2 434 aaKnown RBP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 TERB1Q8NA31 727 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 C12orf50Q8NA57 414 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 EHBP1Q8NDI1 1231 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 NT5C1BQ96P26 610 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 TPSD1Q9BZJ3 242 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 DNAJC17Q9NVM6 304 aaKnown RBP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 RASAL2Q9UJF2 1139 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 TSPAN16Q9UKR8 245 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 STRIP2Q9ULQ0 834 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 STARD13Q9Y3M8 1113 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 PCDHB4Q9Y5E5 795 aa13.38□□□□□ -0.27
PTPRF-214ENST00000496043 HELZP42694 1942 aaKnown RBP13.38□□□□□ -0.27
PTPRF-214ENST00000496043 DCDC2BA2VCK2 349 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 SLC30A4O14863 429 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 ZBTB24O43167 697 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 CACNG3O60359 315 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 FGFR1OPO95684 399 aaKnown RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 PAEPP09466 180 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 BST2Q10589 180 aaKnown RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 CNGA2Q16280 664 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 AASDHQ4L235 1098 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 PGBD3Q8N328 593 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 ZNF513Q8N8E2 541 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 UBA3Q8TBC4 463 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 IPO9Q96P70 1041 aaKnown RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 SRRTQ9BXP5 876 aaKnown RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 ULBP1Q9BZM6 244 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 VPS45Q9NRW7 570 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 OLA1Q9NTK5 396 aaKnown RBP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 MARCH2Q9P0N8 246 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 BCCIPQ9P287 314 aaKnown RBP eCLIP13.37□□□□□ -0.27
PTPRF-214ENST00000496043 MYH10P35580 1976 aa13.37□□□□□ -0.27
PTPRF-214ENST00000496043 SLC12A8A0AV02 714 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 MED19A0JLT2 244 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-214ENST00000496043 TULP2O00295 520 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 TRIM24O15164 1050 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 MAP3K13O43283 966 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 GDF9O60383 454 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 ADAM23O75077 832 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 KLKB1P03952 638 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 HMBSP08397 361 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 CISD3P0C7P0 127 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 SETSIPP0DME0 302 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 CHRM1P11229 460 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-214ENST00000496043 HNRNPLP14866 589 aaKnown RBP eCLIP13.36□□□□□ -0.27
PTPRF-214ENST00000496043 NTSR1P30989 418 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 MPLP40238 635 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 DGKGP49619 791 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 STX17P56962 302 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 KCNH2Q12809 1159 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 SF3A2Q15428 464 aaKnown RBP13.36□□□□□ -0.27
PTPRF-214ENST00000496043 CCDC6Q16204 474 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 PLA2G2CQ5R387 149 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 TMEM270Q6UE05 265 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 LCLAT1Q6UWP7 414 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 PPM1KQ8N3J5 372 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 UBR7Q8N806 425 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 MDGA1Q8NFP4 955 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 OLIG1Q8TAK6 271 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 LMO3Q8TAP4 145 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 RNF139Q8WU17 664 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 KCTD13Q8WZ19 329 aa13.36□□□□□ -0.27
PTPRF-214ENST00000496043 ZDHHC4Q9NPG8 344 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms