RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 SLFN14P0C7P3 912 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 TYRP14679 529 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 PFKFB1P16118 471 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 CD58P19256 250 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 ACO1P21399 889 aaKnown RBP13.34□□□□□ -0.27
SKA1-205ENST00000494518 UNQ6494/PRO21346Q6UXR6 183 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 CLEC20AQ6ZU45 233 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 HSCBQ8IWL3 235 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 CHPFQ8IZ52 775 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 FBXO44Q9H4M3 255 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 APOBEC3GQ9HC16 384 aaKnown RBP13.34□□□□□ -0.27
SKA1-205ENST00000494518 CSNK1G1Q9HCP0 422 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 COMMD8Q9NX08 183 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 CACNA2D2Q9NY47 1150 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 PLK2Q9NYY3 685 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 EVLQ9UI08 416 aaPredicted RBP13.34□□□□□ -0.27
SKA1-205ENST00000494518 LSM7Q9UK45 103 aaKnown RBP13.34□□□□□ -0.27
SKA1-205ENST00000494518 PILRBQ9UKJ0 227 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 CYP8B1Q9UNU6 501 aa13.34□□□□□ -0.27
SKA1-205ENST00000494518 SPAARA0A1B0GVQ0 90 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 A0A1W2PQF6 199 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 HHLA1C9JL84 531 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 PROS1P07225 676 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 PYGBP11216 843 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 RARGP13631 454 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 NDUFV2P19404 249 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 CSRP1P21291 193 aaKnown RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 NTSR1P30989 418 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 ATP5C1P36542 298 aaKnown RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 GCLMP48507 274 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 LMAN2Q12907 356 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 BYSLQ13895 437 aaKnown RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 C10orf120Q5SQS8 335 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 HTR3DQ70Z44 454 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 TRMT11Q7Z4G4 463 aaKnown RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 SLC9A9Q8IVB4 645 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 CRYBG2Q8N1P7 616 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 IPO4Q8TEX9 1081 aaKnown RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 P2RY11Q96G91 374 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 XPO6Q96QU8 1125 aaKnown RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 MAPK8IP1Q9UQF2 711 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 SCML2Q9UQR0 700 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 FRMD4BQ9Y2L6 1034 aa13.33□□□□□ -0.28
SKA1-205ENST00000494518 ANKRD11Q6UB99 2663 aaPredicted RBP13.33□□□□□ -0.28
SKA1-205ENST00000494518 IGHV1OR15-9A0A0B4J2B8 117 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 PDXKO00764 312 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 AP5Z1O43299 807 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 CACNG3O60359 315 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 RPN1P04843 607 aaKnown RBP13.32□□□□□ -0.28
SKA1-205ENST00000494518 HMBSP08397 361 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 PDIA4P13667 645 aaKnown RBP13.32□□□□□ -0.28
SKA1-205ENST00000494518 CEACAM1P13688 526 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 VAMP7P51809 220 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 ATXN3P54252 364 aaPredicted RBP13.32□□□□□ -0.28
SKA1-205ENST00000494518 GOLGA8FQ08AF8 430 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 GOLGA8DPQ0D2H9 430 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 PREPLQ4J6C6 727 aaPredicted RBP13.32□□□□□ -0.28
SKA1-205ENST00000494518 ZNF394Q53GI3 561 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 SDE2Q6IQ49 451 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 KIAA1324Q6UXG2 1013 aaKnown RBP13.32□□□□□ -0.28
SKA1-205ENST00000494518 NUDT18Q6ZVK8 323 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 UNC93AQ86WB7 457 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 SLC41A1Q8IVJ1 513 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 TMC2Q8TDI7 906 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 TAS1R2Q8TE23 839 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 TAF4BQ92750 862 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 SNX21Q969T3 373 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 CYFIP2Q96F07 1278 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 SCNM1Q9BWG6 230 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 ADAM33Q9BZ11 813 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 CYLDQ9NQC7 956 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 RASAL2Q9UJF2 1139 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 NAGPAQ9UK23 515 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 RCOR1Q9UKL0 485 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 CFAP45Q9UL16 551 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 ZMIZ1Q9ULJ6 1067 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 WASF3Q9UPY6 502 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 DSPP15924 2871 aaKnown RBP13.32□□□□□ -0.28
SKA1-205ENST00000494518 CKAP5Q14008 2032 aa13.32□□□□□ -0.28
SKA1-205ENST00000494518 ATRXP46100 2492 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 WASH3PC4AMC7 463 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 HYAL3O43820 417 aaPredicted RBP13.31□□□□□ -0.28
SKA1-205ENST00000494518 CALUO43852 315 aaPredicted RBP13.31□□□□□ -0.28
SKA1-205ENST00000494518 NR2F2P24468 414 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 DGKGP49619 791 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 ZNF33AQ06730 810 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 PPP3CAQ08209 521 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 INCA1Q0VD86 236 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 DUOXA1Q1HG43 343 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 SLC23A3Q6PIS1 610 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 SCD5Q86SK9 330 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 HSPA12BQ96MM6 686 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 HNRNPABQ99729 332 aaKnown RBP13.31□□□□□ -0.28
SKA1-205ENST00000494518 NT5C1AQ9BXI3 368 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 IMPG2Q9BZV3 1241 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.31□□□□□ -0.28
SKA1-205ENST00000494518 MARK1Q9P0L2 795 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 DNMT3LQ9UJW3 386 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 SLC6A14Q9UN76 642 aa13.31□□□□□ -0.28
SKA1-205ENST00000494518 STARD13Q9Y3M8 1113 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms