RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 LPAL2Q16609 132 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 VWA3BQ502W6 1294 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 PRSS36Q5K4E3 855 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 SPOPLQ6IQ16 392 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 CES5AQ6NT32 575 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 VSTM1Q6UX27 236 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 DHX40Q8IX18 779 aaKnown RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 TMEFF1Q8IYR6 380 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 MAML2Q8IZL2 1156 aaPredicted RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 C12orf76Q8N812 135 aaPredicted RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 ATAD1Q8NBU5 361 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 LEMD2Q8NC56 503 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 FEZF2Q8TBJ5 459 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 PSMG2Q969U7 264 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 TNIP3Q96KP6 325 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 SPATA17Q96L03 361 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 CNOT6LQ96LI5 555 aaKnown RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 C8orf48Q96LL4 319 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 MMS19Q96T76 1030 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 SYT15Q9BQS2 421 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 TUBGCP2Q9BSJ2 902 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 PI4K2AQ9BTU6 479 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 UBXN6Q9BZV1 441 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 IMPG2Q9BZV3 1241 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 NUCKS1Q9H1E3 243 aaKnown RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 NDST4Q9H3R1 872 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 SMYD3Q9H7B4 428 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 FANCLQ9NW38 375 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.15□□□□□ -1.26
VPS52-219ENST00000493379 DNMT3BQ9UBC3 853 aaKnown RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 FAM8A1Q9UBU6 413 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 NXF1Q9UBU9 619 aaKnown RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 GTF3C4Q9UKN8 822 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 HCN2Q9UL51 889 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 KIAA1257Q9ULG3 409 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 PCDHB5Q9Y5E4 795 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 INSL5Q9Y5Q6 135 aa7.15□□□□□ -1.26
VPS52-219ENST00000493379 ZFP37Q9Y6Q3 630 aaPredicted RBP7.15□□□□□ -1.26
VPS52-219ENST00000493379 COL12A1Q99715 3063 aa7.15□□□□□ -1.27
VPS52-219ENST00000493379 MTCL1Q9Y4B5 1905 aaKnown RBP7.15□□□□□ -1.27
VPS52-219ENST00000493379 SMTNL1A8MU46 457 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 KCNJ18B7U540 433 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 KHNYNO15037 678 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 HCRTO43612 131 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ATP2C2O75185 946 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 MOSPD3O75425 235 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 C1QL1O75973 258 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 PAEPP09466 180 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 PDGFRBP09619 1106 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 WEE2P0C1S8 567 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 SPATA31D3P0C874 917 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 HMGA1P17096 107 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 PTPN2P17706 415 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TARSP26639 723 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 PON1P27169 355 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ELF1P32519 619 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 PIK3CAP42336 1068 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ZNF165P49910 485 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 NDST1P52848 882 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 RAD23BP54727 409 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TSPY1Q01534 308 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TNP2Q05952 138 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 PLD1Q13393 1074 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 CUL2Q13617 745 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 KCNJ12Q14500 433 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 MEA1Q16626 185 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ZSCAN23Q3MJ62 389 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 SLC39A12Q504Y0 691 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 DCAF17Q5H9S7 520 aaPredicted RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 PPM1LQ5SGD2 360 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 LIN9Q5TKA1 542 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TCERG1LQ5VWI1 586 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ARHGAP17Q68EM7 881 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 LLGL2Q6P1M3 1020 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TRIM65Q6PJ69 517 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 NXPE4Q6UWF7 544 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TMC5Q6UXY8 1006 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 C4orf50Q6ZRC1 276 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 SPATA31D4Q6ZUB0 917 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ENOSF1Q7L5Y1 443 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TMC8Q8IU68 726 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 C1orf210Q8IVY1 113 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ZDHHC14Q8IZN3 488 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 FUKQ8N0W3 1084 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 B3GALNT2Q8NCR0 500 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 CCDC150Q8NCX0 1101 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 OR6B3Q8NGW1 331 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 SLC7A14Q8TBB6 771 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 SREK1Q8WXA9 508 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 NXPE3Q969Y0 559 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TRMT2BQ96GJ1 504 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 PCED1BQ96HM7 432 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 ERGIC2Q96RQ1 377 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TTLL2Q9BWV7 592 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 NT5C1AQ9BXI3 368 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 NAA15Q9BXJ9 866 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 B3GNT5Q9BYG0 378 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 TGIF2Q9GZN2 237 aa7.14□□□□□ -1.27
VPS52-219ENST00000493379 NAT10Q9H0A0 1025 aaKnown RBP7.14□□□□□ -1.27
VPS52-219ENST00000493379 SNX25Q9H3E2 840 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms