RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GPR182O15218 404 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 KIAA0754O94854 1291 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 SCNN1GP51170 649 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 GBE1Q04446 702 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 IFT88Q13099 833 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 MTM1Q13496 603 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 MRPL10Q7Z7H8 261 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 C10orf67Q8IYJ2 551 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 TMEM86AQ8N2M4 240 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 KRT82Q9NSB4 513 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 FETUBQ9UGM5 382 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 ZFXP17010 805 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 NDUFV1P49821 464 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 YWHAZP63104 245 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 PRKCZQ05513 592 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 CACNB2Q08289 660 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 CDKL3Q8IVW4 592 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 SYT15Q9BQS2 421 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 LRRC4Q9HBW1 653 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 MLXIPLQ9NP71 852 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 XPNPEP3Q9NQH7 507 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 RAB6BQ9NRW1 208 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 FZD10Q9ULW2 581 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 USP3Q9Y6I4 520 aa21.92■■□□□ 1.1
CCDC88B-208ENST00000492980 RPLP2P05387 115 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 ASGR1P07306 291 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 VIMP08670 466 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 FAM200BP0CF97 657 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 TSHRP16473 764 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 LHX1P48742 406 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 GEMIN4P57678 1058 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 SLC10A2Q12908 348 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 PKN2Q16513 984 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 C3orf62Q6ZUJ4 267 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 BNIPLQ7Z465 357 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 FAM131BQ86XD5 332 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 LRRN4Q8WUT4 740 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 NT5C3BQ969T7 300 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 ACSS3Q9H6R3 686 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 PSMC3IPQ9P2W1 217 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 TSC2P49815 1807 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 THPOP40225 353 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 MAP3K7CLP57077 242 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 PITX1P78337 314 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 XRCC4Q13426 336 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 EFTUD2Q15029 972 aaKnown RBP eCLIP21.91■■□□□ 1.16e-8■■■■□ 22.8
CCDC88B-208ENST00000492980 DCAF6Q58WW2 860 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 SYCP2LQ5T4T6 812 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 PPP1R21Q6ZMI0 780 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 PIGWQ7Z7B1 504 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 IGDCC3Q8IVU1 814 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 SIX6OS1Q8N1H7 587 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 PYROXD2Q8N2H3 581 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 CKAP2Q8WWK9 683 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 CABS1Q96KC9 395 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 CHMP2BQ9UQN3 213 aa21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 TIMM13Q9Y5L4 95 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-208ENST00000492980 CD52P31358 61 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 NOS2P35228 1153 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 NR2C2P49116 596 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 CBLBQ13191 982 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 KCNA10Q16322 511 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 SLC45A4Q5BKX6 768 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 NCBP2-AS2Q69YL0 99 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 DSTYKQ6XUX3 929 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 PALM2Q8IXS6 379 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 OTUD6BQ8N6M0 293 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 FBF1Q8TES7 1133 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 MRRFQ96E11 262 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 SLC2A13Q96QE2 648 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 NPY6RQ99463 290 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 DHRS4Q9BTZ2 278 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 NKIRAS1Q9NYS0 192 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 ABT1Q9ULW3 272 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 PADI3Q9ULW8 664 aa21.9■■□□□ 1.1
CCDC88B-208ENST00000492980 CASTOR2A6NHX0 329 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 MGEA5O60502 916 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 GOT1P17174 413 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 RPL9P32969 192 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 ELK3P41970 407 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 MAGEA9P43362 315 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 ARHGEF18Q6ZSZ5 1173 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 FAM35AQ86V20 835 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 TAX1BP1Q86VP1 789 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 KLHDC9Q8NEP7 349 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 PAAF1Q9BRP4 392 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 TRABDQ9H4I3 376 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 ETNK2Q9NVF9 386 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 TEX264Q9Y6I9 313 aa21.89■■□□□ 1.1
CCDC88B-208ENST00000492980 CASP8AP2Q9UKL3 1982 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 MYBPHLA2RUH7 354 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 FAM47DPA6NHR8 397 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 KRT15P19012 456 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 AMPD1P23109 780 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 CCND3P30281 292 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 MAGEA6P43360 314 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 TKTL1P51854 596 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 UPP1Q16831 310 aa21.89■■□□□ 1.09
CCDC88B-208ENST00000492980 KLHL38Q2WGJ6 581 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms