RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 CCAR1Q8IX12 1150 aaKnown RBP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 ZNF366Q8N895 744 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 ATP11CQ8NB49 1132 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 CUL5Q93034 780 aa5.66□□□□□ -1.5
PTPN4-212ENST00000488896 ZC3H10Q96K80 434 aaKnown RBP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 DDX21Q9NR30 783 aaKnown RBP eCLIP5.66□□□□□ -1.5
PTPN4-212ENST00000488896 A0A087WZ62 844 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 H3BNC9 293 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 WDR47O94967 919 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 IGKV2-30P06310 120 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 HOXD9P28356 352 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-212ENST00000488896 GALNSP34059 522 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 HTR7P34969 479 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 PLCD1P51178 756 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 YPEL5P62699 121 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 KPNB1Q14974 876 aaKnown RBP5.65□□□□□ -1.5
PTPN4-212ENST00000488896 MBD3L2Q8NHZ7 208 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-212ENST00000488896 ZBTB9Q96C00 473 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 ZDHHC12Q96GR4 267 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 NAF1Q96HR8 494 aaKnown RBP5.65□□□□□ -1.5
PTPN4-212ENST00000488896 FAM227BQ96M60 508 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 TBCBQ99426 244 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 SELENOOQ9BVL4 669 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 ADGRE3Q9BY15 652 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 SAP30LQ9HAJ7 183 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 RGS17Q9UGC6 210 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-212ENST00000488896 PCDHB2Q9Y5E7 798 aa5.65□□□□□ -1.5
PTPN4-212ENST00000488896 FOXN3O00409 490 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-212ENST00000488896 PBX1P40424 430 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 PRIM2P49643 509 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 CCDC15Q0P6D6 951 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 GPS1Q13098 491 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 FHL3Q13643 280 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 CLCA4Q14CN2 919 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 PFKFB3Q16875 520 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-212ENST00000488896 CCDC150Q8NCX0 1101 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 ZNF398Q8TD17 642 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 CINPQ9BW66 212 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-212ENST00000488896 VPS45Q9NRW7 570 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 TMEM184CQ9NVA4 438 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 CHPF2Q9P2E5 772 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 PI4KBQ9UBF8 816 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 FZD4Q9ULV1 537 aa5.64□□□□□ -1.51
PTPN4-212ENST00000488896 COQ9O75208 318 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 MYL3P08590 195 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 TMIGD3P0DMS9 266 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-212ENST00000488896 DRD1P21728 446 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 FGFR2P21802 821 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 STT3AP46977 705 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 MTAPQ13126 283 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 BFSP2Q13515 415 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 TMEM63BQ5T3F8 832 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 KRT28Q7Z3Y7 464 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 SUN3Q8TAQ9 357 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 KAZALD1Q96I82 304 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 HIC2Q96JB3 615 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 MAGEB5Q9BZ81 275 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 ARL8BQ9NVJ2 186 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 MTMR4Q9NYA4 1195 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 MAFFQ9ULX9 164 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 AFG3L2Q9Y4W6 797 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 COL15A1P39059 1388 aa5.63□□□□□ -1.51
PTPN4-212ENST00000488896 APAF1O14727 1248 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 CCNT2O60583 730 aaKnown RBP5.62□□□□□ -1.51
PTPN4-212ENST00000488896 ARP10275 920 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 SLC5A1P13866 664 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 TSHRP16473 764 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 JAK3P52333 1124 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 RAE1P78406 368 aaKnown RBP5.62□□□□□ -1.51
PTPN4-212ENST00000488896 FAXCQ5TGI0 409 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 ABLIM2Q6H8Q1 611 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 NRACQ8N912 160 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 ABHD5Q8WTS1 349 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 SIGLEC11Q96RL6 698 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 ZBTB26Q9HCK0 441 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 GAR1Q9NY12 217 aaKnown RBP5.62□□□□□ -1.51
PTPN4-212ENST00000488896 TMOD4Q9NZQ9 345 aa5.62□□□□□ -1.51
PTPN4-212ENST00000488896 APOL1O14791 398 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 PMM2O15305 246 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 FGBP02675 491 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 TACR3P29371 465 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 NR4A2P43354 598 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 CASP5P51878 434 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 WDR5P61964 334 aaKnown RBP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 DNASE1L3Q13609 305 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 ACOX1Q15067 660 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 SAFBQ15424 915 aaKnown RBP eCLIP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 RBMS2Q15434 407 aaKnown RBP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 AASDHQ4L235 1098 aaPredicted RBP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 Q8N9P0 234 aaPredicted RBP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 HMCESQ96FZ2 354 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 SARGQ9BW04 601 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 NUAK2Q9H093 628 aa5.61□□□□□ -1.51
PTPN4-212ENST00000488896 HEMK1Q9Y5R4 338 aaPredicted RBP5.61□□□□□ -1.51
PTPN4-212ENST00000488896 AREL1O15033 823 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 ZSCAN9O15535 394 aaPredicted RBP5.6□□□□□ -1.51
PTPN4-212ENST00000488896 NDST3O95803 873 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 MBPP02686 304 aaPredicted RBP5.6□□□□□ -1.51
PTPN4-212ENST00000488896 MYL4P12829 197 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms