RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SLC15A5A6NIM6 579 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 CCDC22O60826 627 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 CYP2F1P24903 491 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 GRIA1P42261 906 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 CCNG1P51959 295 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 SLC8A3P57103 927 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 GBE1Q04446 702 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 CRYMQ14894 314 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 WASHC2DQ5SRD0 308 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 TRMT10BQ6PF06 316 aaKnown RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 UNC5AQ6ZN44 842 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 RINLQ6ZS11 566 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 LINC01465Q8N7H1 131 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 SKA1Q96BD8 255 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 DCPSQ96C86 337 aaKnown RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 LBHD1Q9BQE6 289 aaPredicted RBP18.62■□□□□ 0.57
VIM-206ENST00000487938 NRDE2Q9H7Z3 1164 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 ARMCX1Q9P291 453 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 PLLPQ9Y342 182 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 C2CD2Q9Y426 696 aa18.62■□□□□ 0.57
VIM-206ENST00000487938 CCDC195A0A1B0GUA6 201 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 EIF4E1BA6NMX2 242 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 RFPL1O75677 317 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 TGDSO95455 350 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 APOEP02649 317 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 CSH1P0DML2 217 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 CSH2P0DML3 217 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 IREB2P48200 963 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 MRPS5P82675 430 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 CES4AQ5XG92 561 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 ARMCX2Q7L311 632 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 ALYREFQ86V81 257 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 SULF1Q8IWU6 871 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 AFG1LQ8WV93 481 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 SLC4A5Q9BY07 1137 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 DHX35Q9H5Z1 703 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 ADARB2Q9NS39 739 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 GINS2Q9Y248 185 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 DPYSL4O14531 572 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 GYG2O15488 501 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 GSC2O15499 205 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 KHDC1Q4VXA5 237 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 PKDCCQ504Y2 493 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 MROH9Q5TGP6 573 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 DSTYKQ6XUX3 929 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 ERO1BQ86YB8 467 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 SLC35F5Q8WV83 523 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 TEKT4Q8WW24 435 aa18.61■□□□□ 0.57
VIM-206ENST00000487938 ZMAT2Q96NC0 199 aaKnown RBP18.61■□□□□ 0.57
VIM-206ENST00000487938 TRDMT1O14717 391 aaKnown RBP18.6■□□□□ 0.57
VIM-206ENST00000487938 KITP10721 976 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 PRKCHP24723 683 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 L1CAMP32004 1257 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 TMEM62Q0P6H9 643 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 TTLL12Q14166 644 aaPredicted RBP18.6■□□□□ 0.57
VIM-206ENST00000487938 TRIM68Q6AZZ1 485 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 MTHFD1LQ6UB35 978 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 C4orf50Q6ZRC1 276 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 TMEM110Q86TL2 294 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 IFNLR1Q8IU57 520 aaPredicted RBP18.6■□□□□ 0.57
VIM-206ENST00000487938 OXNAD1Q96HP4 312 aaPredicted RBP18.6■□□□□ 0.57
VIM-206ENST00000487938 FAM167BQ9BTA0 163 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 DPEP3Q9H4B8 488 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 SNTG2Q9NY99 539 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 SCN1AP35498 2009 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 TMPRSS15P98073 1019 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 BST1Q10588 318 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 LGSNQ5TDP6 509 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 ZNF534Q76KX8 674 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 OR6B3Q8NGW1 331 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 SIGLEC10Q96LC7 697 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 PCMTD2Q9NV79 361 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 SUFUQ9UMX1 484 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 MFHAS1Q9Y4C4 1052 aa18.6■□□□□ 0.57
VIM-206ENST00000487938 FCHO1O14526 889 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 CXCL11O14625 94 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 HNRNPCL1O60812 293 aaKnown RBP18.59■□□□□ 0.57
VIM-206ENST00000487938 DNAJC6O75061 913 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 NPTXRO95502 500 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 TOP3BO95985 862 aaKnown RBP18.59■□□□□ 0.57
VIM-206ENST00000487938 PDGFRBP09619 1106 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 ESRRAP11474 423 aaPredicted RBP18.59■□□□□ 0.57
VIM-206ENST00000487938 LCP1P13796 627 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 LAMC2Q13753 1193 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 CHI3L2Q15782 390 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 GLRA4Q5JXX5 417 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 KCNT2Q6UVM3 1135 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 APBB1IPQ7Z5R6 666 aaPredicted RBP18.59■□□□□ 0.57
VIM-206ENST00000487938 VPS52Q8N1B4 723 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 NETO2Q8NC67 525 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 NAF1Q96HR8 494 aaKnown RBP18.59■□□□□ 0.57
VIM-206ENST00000487938 ZNF670Q9BS34 389 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 FRMD8Q9BZ67 464 aaPredicted RBP18.59■□□□□ 0.57
VIM-206ENST00000487938 NMUR2Q9GZQ4 415 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 HESX1Q9UBX0 185 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 ZNF180Q9UJW8 692 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 HES2Q9Y543 173 aa18.59■□□□□ 0.57
VIM-206ENST00000487938 MDM4O15151 490 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 CPA2P48052 419 aa18.58■□□□□ 0.57
VIM-206ENST00000487938 STILQ15468 1287 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms