RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 GFRA2O00451 464 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 EIF3DO15371 548 aaKnown RBP eCLIP16.23■□□□□ 0.19
MCF2L-228ENST00000487354 TNNI1P19237 187 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 CD6P30203 668 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 CASP4P49662 377 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 ENPP2Q13822 863 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 E2F4Q16254 413 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 KIAA1324Q6UXG2 1013 aaKnown RBP16.23■□□□□ 0.19
MCF2L-228ENST00000487354 DBX2Q6ZNG2 339 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 TMPRSS7Q7RTY8 843 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 METTL3Q86U44 580 aaKnown RBP16.23■□□□□ 0.19
MCF2L-228ENST00000487354 ZNF507Q8TCN5 953 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 HNRNPLLQ8WVV9 542 aaKnown RBP16.23■□□□□ 0.19
MCF2L-228ENST00000487354 FOXJ1Q92949 421 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 TOE1Q96GM8 510 aaKnown RBP16.23■□□□□ 0.19
MCF2L-228ENST00000487354 ZDHHC5Q9C0B5 715 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 CSNK1G1Q9HCP0 422 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 SCUBE2Q9NQ36 999 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 CYLDQ9NQC7 956 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 COMMD8Q9NX08 183 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 KIAA1522Q9P206 1035 aaPredicted RBP16.23■□□□□ 0.19
MCF2L-228ENST00000487354 DKK4Q9UBT3 224 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 PCDHB9Q9Y5E1 797 aa16.23■□□□□ 0.19
MCF2L-228ENST00000487354 SHROOM3Q8TF72 1996 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 KALRNO60229 2985 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 A0A1B0GTW7 788 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 HHLA1C9JL84 531 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 CLIC2O15247 247 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 NDUFS2O75306 463 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 AP1G2O75843 785 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 ZNF883P0CG24 379 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 NCAM1P13591 858 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 CCDC130P13994 396 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 TXLNAP40222 546 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 EHHADHQ08426 723 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 ORC1Q13415 861 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 CAMK2BQ13554 666 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 WDR45BQ5MNZ6 344 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 SYCP2LQ5T4T6 812 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 NUDT18Q6ZVK8 323 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 CCDC65Q8IXS2 484 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 RBBP8NLQ8NC74 664 aaPredicted RBP16.22■□□□□ 0.19
MCF2L-228ENST00000487354 SCFD1Q8WVM8 642 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 CRELD1Q96HD1 420 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 XPO6Q96QU8 1125 aaKnown RBP16.22■□□□□ 0.19
MCF2L-228ENST00000487354 NMUR1Q9HB89 426 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 KBTBD4Q9NVX7 518 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 APOBEC2Q9Y235 224 aaKnown RBP16.22■□□□□ 0.19
MCF2L-228ENST00000487354 STON1Q9Y6Q2 735 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 PLXNA2O75051 1894 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 ASXL3Q9C0F0 2248 aa16.22■□□□□ 0.19
MCF2L-228ENST00000487354 ATP8B3O60423 1300 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 VPS37CA5D8V6 355 aaPredicted RBP16.21■□□□□ 0.19
MCF2L-228ENST00000487354 MDM4O15151 490 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 CYP26A1O43174 497 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 CILPO75339 1184 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 VNN1O95497 513 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 IGLV3-19P01714 112 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 ATXN1LP0C7T5 689 aaKnown RBP16.21■□□□□ 0.19
MCF2L-228ENST00000487354 GNSP15586 552 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 ACO1P21399 889 aaKnown RBP16.21■□□□□ 0.19
MCF2L-228ENST00000487354 ATICP31939 592 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 IL12RB1P42701 662 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 DGKGP49619 791 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 CYP2J2P51589 502 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 CEBPZQ03701 1054 aaKnown RBP16.21■□□□□ 0.19
MCF2L-228ENST00000487354 SDE2Q6IQ49 451 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 SCARA5Q6ZMJ2 495 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 ACOT1Q86TX2 421 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 PDILTQ8N807 584 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 BHMTQ93088 406 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 MED10Q9BTT4 135 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 GPR174Q9BXC1 333 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 TNMDQ9H2S6 317 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 ITM2CQ9NQX7 267 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 PLK2Q9NYY3 685 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 WDR35Q9P2L0 1181 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 BTBD3Q9Y2F9 522 aa16.21■□□□□ 0.19
MCF2L-228ENST00000487354 FLNBO75369 2602 aaKnown RBP16.2■□□□□ 0.18
MCF2L-228ENST00000487354 MEI4A8MW99 385 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 PENKP01210 267 aaPredicted RBP16.2■□□□□ 0.18
MCF2L-228ENST00000487354 TPMTP51580 245 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 COPAP53621 1224 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 MFAP3P55082 362 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 GEN1Q17RS7 908 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 DCAF12L1Q5VU92 463 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 FYB2Q5VWT5 728 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 XXYLT1Q8NBI6 393 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 CADM4Q8NFZ8 388 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 SLC2A14Q8TDB8 520 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 SYAP1Q96A49 352 aaPredicted RBP16.2■□□□□ 0.18
MCF2L-228ENST00000487354 LRIG1Q96JA1 1093 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 USP28Q96RU2 1077 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 GAREM1Q9H706 876 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 PRDM16Q9HAZ2 1276 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 TM7SF3Q9NS93 570 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 THAP10Q9P2Z0 257 aaPredicted RBP16.2■□□□□ 0.18
MCF2L-228ENST00000487354 SLC27A6Q9Y2P4 619 aa16.2■□□□□ 0.18
MCF2L-228ENST00000487354 COL5A1P20908 1838 aaPredicted RBP16.19■□□□□ 0.18
MCF2L-228ENST00000487354 METTL12A8MUP2 240 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms