RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NDUFA13Q9P0J0 144 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 FAM8A1Q9UBU6 413 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 CORO1CQ9ULV4 474 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-228ENST00000486227 PSMD3O43242 534 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 CKMP06732 381 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 PRKAR2AP13861 404 aaKnown RBP11.39□□□□□ -0.59
HDAC6-228ENST00000486227 KRT4P19013 534 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 MIPP30301 263 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 NUMBP49757 651 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 GSCP56915 257 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-228ENST00000486227 MORF4L2Q15014 288 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 HABP4Q5JVS0 413 aaKnown RBP11.39□□□□□ -0.59
HDAC6-228ENST00000486227 HGSNATQ68CP4 663 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-228ENST00000486227 FRA10AC1Q70Z53 315 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 NLRP9Q7RTR0 991 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 EDEM1Q92611 657 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 LENG9Q96B70 501 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 KREMEN1Q96MU8 473 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 HTATIP2Q9BUP3 242 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 MRPL9Q9BYD2 267 aaKnown RBP11.39□□□□□ -0.59
HDAC6-228ENST00000486227 MUC3BQ9H195 1237 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 TRPV2Q9Y5S1 764 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 LRP6O75581 1613 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 NRCAMQ92823 1304 aa11.39□□□□□ -0.59
HDAC6-228ENST00000486227 AP3B1O00203 1094 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 SNX3O60493 162 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 PGK1P00558 417 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 HMGCRP04035 888 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 STX3Q13277 289 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 NT5DC4Q86YG4 428 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 MBOAT7Q96N66 472 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 IL1RAPL1Q9NZN1 696 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 DNPEPQ9ULA0 475 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 TTC4O95801 387 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 ENO1P06733 434 aaKnown RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CALB2P22676 271 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 FECHP22830 423 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 AXLP30530 894 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 SPRP35270 261 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 FLT3LGP49771 235 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 LACTB2Q53H82 288 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 RARS2Q5T160 578 aaKnown RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CATSPER1Q8NEC5 780 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CDC26Q8NHZ8 85 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 STK32AQ8WU08 396 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 GPR20Q99678 358 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 PAIP2BQ9ULR5 123 aaKnown RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 RPS6KL1Q9Y6S9 549 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 A0A0B4J269 797 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 B2RBV5 119 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 SLC2A3P11169 496 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CYP2F1P24903 491 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 PTPN4P29074 926 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 KDSRQ06136 332 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 MAMLD1Q13495 774 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 RIPK1Q13546 671 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CYLC2Q14093 348 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 IKBKEQ14164 716 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 ATP13A4Q4VNC1 1196 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 OVOS1Q6IE37 1185 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 IRGCQ6NXR0 463 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 RPRD1AQ96P16 312 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CHCHD3Q9NX63 227 aaKnown RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 ZNF214Q9UL59 606 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 SMIM10L2AP0DMW4 78 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 SMIM10L2BP0DMW5 78 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 ZBTB48P10074 688 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 YWHAZP63104 245 aaKnown RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 CCDC15Q0P6D6 951 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 UGP2Q16851 508 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 KCTD19Q17RG1 926 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-228ENST00000486227 FAM110CQ1W6H9 321 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 APOL2Q9BQE5 337 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 PCDH9Q9HC56 1237 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 ANLNQ9NQW6 1124 aa11.38□□□□□ -0.59
HDAC6-228ENST00000486227 FBXO21O94952 628 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CYP1A2P05177 515 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CCDC130P13994 396 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 DNAJB2P25686 324 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 IFI35P80217 286 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 TMTC4Q5T4D3 741 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 NAPEPLDQ6IQ20 393 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 FBXO32Q969P5 355 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 RNPEPL1Q9HAU8 725 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 NMRK2Q9NPI5 230 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 TRPM5Q9NZQ8 1165 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 BAG5Q9UL15 447 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 SLC4A7Q9Y6M7 1214 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 RIPK2O43353 540 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 JCHAINP01591 159 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 FDFT1P37268 417 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 SLC11A2P49281 568 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 GRAMD4Q6IC98 578 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 B4GALNT2Q8NHY0 566 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 ADAM32Q8TC27 787 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 BHMTQ93088 406 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 PPP1R36Q96LQ0 422 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CYP4F11Q9HBI6 524 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 ARHGEF38Q9NXL2 777 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms