RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FBXO38Q6PIJ6 1188 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 CHSY1Q86X52 802 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 C12orf76Q8N812 135 aaPredicted RBP6.98□□□□□ -1.29
USP40-213ENST00000483216 ADAMTS18Q8TE60 1221 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 STK33Q9BYT3 514 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 TMEM8AQ9HCN3 771 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 ASAP1Q9ULH1 1129 aa6.98□□□□□ -1.29
USP40-213ENST00000483216 PRRT4C9JH25 899 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 UBE2Q2LH0YL09 131 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 H3BNC9 293 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 PODXLO00592 558 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 LATS1O95835 1130 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 PECAM1P16284 738 aaPredicted RBP6.97□□□□□ -1.29
USP40-213ENST00000483216 ABCB4P21439 1286 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 DGKQP52824 942 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 COPB1P53618 953 aaKnown RBP6.97□□□□□ -1.29
USP40-213ENST00000483216 CFHR3Q02985 330 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 NSUN2Q08J23 767 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP40-213ENST00000483216 CCDC142Q17RM4 750 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 TLDC1Q6P9B6 456 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 SERPINA13PQ6UXR4 307 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 ZNF782Q6ZMW2 699 aaPredicted RBP6.97□□□□□ -1.29
USP40-213ENST00000483216 TOGARAM2Q6ZUX3 1019 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 MORC1Q86VD1 984 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 EDC3Q96F86 508 aaKnown RBP6.97□□□□□ -1.29
USP40-213ENST00000483216 SLC39A13Q96H72 371 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 RITA1Q96K30 269 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 CCDC17Q96LX7 622 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 RXFP3Q9NSD7 469 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 FLRT1Q9NZU1 646 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 CA14Q9ULX7 337 aa6.97□□□□□ -1.29
USP40-213ENST00000483216 ARHGEF17Q96PE2 2063 aaPredicted RBP6.96□□□□□ -1.29
USP40-213ENST00000483216 DNASE1L3Q13609 305 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 KCNJ12Q14500 433 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 FAM187BQ17R55 369 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 AASDHQ4L235 1098 aaPredicted RBP6.96□□□□□ -1.3
USP40-213ENST00000483216 COLEC12Q5KU26 742 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 TMTC4Q5T4D3 741 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 ARL6IP4Q66PJ3 421 aaKnown RBP6.96□□□□□ -1.3
USP40-213ENST00000483216 XRRA1Q6P2D8 792 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 PNLDC1Q8NA58 520 aaKnown RBP6.96□□□□□ -1.3
USP40-213ENST00000483216 ASB2Q96Q27 587 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 NUDT22Q9BRQ3 303 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 ARFGAP3Q9NP61 516 aa6.96□□□□□ -1.3
USP40-213ENST00000483216 ADAMTS3O15072 1205 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 ZSCAN9O15535 394 aaPredicted RBP6.95□□□□□ -1.3
USP40-213ENST00000483216 VIPP01282 170 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 SERPINB3P29508 390 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 PBX1P40424 430 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 GPC5P78333 572 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 TXNL4AP83876 142 aaKnown RBP6.95□□□□□ -1.3
USP40-213ENST00000483216 GRM1Q13255 1194 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 LARS2Q15031 903 aaKnown RBP6.95□□□□□ -1.3
USP40-213ENST00000483216 RAB30Q15771 203 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 CERKLQ49MI3 558 aaPredicted RBP6.95□□□□□ -1.3
USP40-213ENST00000483216 ARHGAP15Q53QZ3 475 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 KIAA1614Q5VZ46 1190 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 SYTL1Q8IYJ3 562 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 MAFAQ8NHW3 353 aaPredicted RBP6.95□□□□□ -1.3
USP40-213ENST00000483216 GRAMD1AQ96CP6 724 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 TMEM41AQ96HV5 264 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 KAZALD1Q96I82 304 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 CINPQ9BW66 212 aaPredicted RBP6.95□□□□□ -1.3
USP40-213ENST00000483216 SLC39A10Q9ULF5 831 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 FZD4Q9ULV1 537 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 FRMD4BQ9Y2L6 1034 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 DTNAQ9Y4J8 743 aa6.95□□□□□ -1.3
USP40-213ENST00000483216 CGB1A6NKQ9 187 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 CA12O43570 354 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 GCATO75600 419 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 USP1O94782 785 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 SETSIPP0DME0 302 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 ATF7P17544 494 aaPredicted RBP6.94□□□□□ -1.3
USP40-213ENST00000483216 YY1P25490 414 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 PPM1AP35813 382 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 MRPS21P82921 87 aaKnown RBP6.94□□□□□ -1.3
USP40-213ENST00000483216 P3H2Q8IVL5 708 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 SAMD3Q8N6K7 520 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 FAM71DQ8N9W8 422 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 TTLL2Q9BWV7 592 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 SEMA4CQ9C0C4 833 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 VPS45Q9NRW7 570 aa6.94□□□□□ -1.3
USP40-213ENST00000483216 ADARB2Q9NS39 739 aaKnown RBP6.94□□□□□ -1.3
USP40-213ENST00000483216 GLP2RO95838 553 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 TMIGD3P0DMS9 266 aaPredicted RBP6.93□□□□□ -1.3
USP40-213ENST00000483216 ZNF37AP17032 561 aaPredicted RBP6.93□□□□□ -1.3
USP40-213ENST00000483216 CERS1P27544 350 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 TECP42680 631 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 CCDC15Q0P6D6 951 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 FOXF2Q12947 444 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 FAM90A2PQ658T7 463 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 TMEM65Q6PI78 240 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 DCDC5Q6ZRR9 648 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 SRRM1Q8IYB3 904 aaKnown RBP6.93□□□□□ -1.3
USP40-213ENST00000483216 CLASRPQ8N2M8 674 aaKnown RBP6.93□□□□□ -1.3
USP40-213ENST00000483216 C8orf58Q8NAV2 365 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 OVCA2Q8WZ82 227 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 HS6ST2Q96MM7 605 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 USP29Q9HBJ7 922 aa6.93□□□□□ -1.3
USP40-213ENST00000483216 HELLSQ9NRZ9 838 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms