RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	DUS2	Q9NX74	493 aa	Known RBP	10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	SFMBT1	Q9UHJ3	866 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	DNMT3L	Q9UJW3	386 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	SH3BP1	Q9Y3L3	701 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	PIAS3	Q9Y6X2	628 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	NCOR1	O75376	2440 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	COL4A3	Q01955	1670 aa		10.76	□□□□□ -0.69
HDAC6-222	ENST00000478095	SLC12A8	A0AV02	714 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	OTOL1	A6NHN0	477 aa	Predicted RBP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	PRR33	A8MZF0	331 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	MSI1	O43347	362 aa	Known RBP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	GPR37L1	O60883	481 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	FBXO21	O94952	628 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	LTF	P02788	710 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	TCF3	P15923	654 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	CHRNB2	P17787	502 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	PBX1	P40424	430 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	FMO1	Q01740	532 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	CDR2	Q01850	454 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	TAF5	Q15542	800 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	EML3	Q32P44	896 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	E4F1	Q66K89	784 aa	Predicted RBP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	CWF19L1	Q69YN2	538 aa	Known RBP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	SMYD5	Q6GMV2	418 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	OR6B2	Q6IFH4	312 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	KLHDC10	Q6PID8	442 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	FAM183BP	Q6ZVS7	135 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	DDX42	Q86XP3	938 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	SCML4	Q8N228	414 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	TMEM35B	Q8NCS4	154 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	IPO4	Q8TEX9	1081 aa	Known RBP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	OSCP1	Q8WVF1	389 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	CPA5	Q8WXQ8	436 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	IRGQ	Q8WZA9	623 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	GOLGA1	Q92805	767 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	NOX5	Q96PH1	765 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	LRFN3	Q9BTN0	628 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	FOXQ1	Q9C009	403 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	TTYH3	Q9C0H2	523 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	RBSN	Q9H1K0	784 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	SEPT11	Q9NVA2	429 aa	Known RBP	10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	MARCH2	Q9P0N8	246 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	STRIP2	Q9ULQ0	834 aa		10.75	□□□□□ -0.69
HDAC6-222	ENST00000478095	E2F8	A0AVK6	867 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	SART1	O43290	800 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	GRAP2	O75791	330 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	LSM8	O95777	96 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	FYN	P06241	537 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	TPM3	P06753	285 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	NCAM1	P13591	858 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	FER	P16591	822 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	CDH5	P33151	784 aa	Predicted RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	VCP	P55072	806 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	NOMO3	P69849	1222 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	PRKCQ	Q04759	706 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	GOLGA8F	Q08AF8	430 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	GOLGA8DP	Q0D2H9	430 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	RUNX3	Q13761	415 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	UBXN2B	Q14CS0	331 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	PDGFRL	Q15198	375 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ASIC2	Q16515	512 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ITPRIPL2	Q3MIP1	535 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	NAIF1	Q69YI7	327 aa	Predicted RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	GAS2L3	Q86XJ1	694 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ZNF677	Q86XU0	584 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	FMNL3	Q8IVF7	1028 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	BBS7	Q8IWZ6	715 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	SUGP1	Q8IWZ8	645 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	SLC30A5	Q8TAD4	765 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ADAM32	Q8TC27	787 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	CPLX3	Q8WVH0	158 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ATP2A3	Q93084	1043 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ZDHHC16	Q969W1	377 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	CDK5RAP1	Q96SZ6	601 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	PCDHB18P	Q96TA0	734 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ECT2	Q9H8V3	914 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	TRPV5	Q9NQA5	729 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	ABCC13	Q9NSE7	274 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	NDRG2	Q9UN36	371 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	NAALADL1	Q9UQQ1	740 aa		10.74	□□□□□ -0.69
HDAC6-222	ENST00000478095	TECTA	O75443	2155 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	PATJ	Q8NI35	1801 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	KANSL1L	A0AUZ9	987 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	SHISA7	A6NL88	538 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	SPECC1L-ADORA2A	F8WAN1	911 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	GOLGA8S	H3BPF8	625 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	CAPN9	O14815	690 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	AP5Z1	O43299	807 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	CBFA2T2	O43439	604 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	PI15	O43692	258 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	GREM1	O60565	184 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	STC2	O76061	302 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	CYP1A1	P04798	512 aa	Predicted RBP	10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	CORO1A	P31146	461 aa	Known RBP	10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	CTH	P32929	405 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	STARD6	P59095	220 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	FIGN	Q5HY92	759 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	SFMBT2	Q5VUG0	894 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	SYPL2	Q5VXT5	272 aa		10.73	□□□□□ -0.69
HDAC6-222	ENST00000478095	TXNDC11	Q6PKC3	985 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms